Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC12.64□□□□□ -0.39
SOX2P48431 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SOX2P48431 ZNF384-201ENST00000319770 3266 ntTSL 2 BASIC12.64□□□□□ -0.39
SOX2P48431 ADGRD1-201ENST00000261654 5168 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SOX2P48431 PDCD6IPP2-206ENST00000566178 3351 ntTSL 5 BASIC12.64□□□□□ -0.39
SOX2P48431 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC12.64□□□□□ -0.39
SOX2P48431 OPLAH-204ENST00000618853 4031 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SOX2P48431 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
SOX2P48431 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
SOX2P48431 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
SOX2P48431 PDE7B-203ENST00000615259 5234 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
SOX2P48431 AC134312.5-201ENST00000568031 1313 ntBASIC12.63□□□□□ -0.39
SOX2P48431 MED6-201ENST00000256379 1995 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC12.63□□□□□ -0.39
SOX2P48431 GOLGA8EP-201ENST00000530246 1959 ntBASIC12.63□□□□□ -0.39
SOX2P48431 AC009093.10-201ENST00000641956 1442 ntBASIC12.63□□□□□ -0.39
SOX2P48431 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
SOX2P48431 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC12.63□□□□□ -0.39
SOX2P48431 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC12.63□□□□□ -0.39
SOX2P48431 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 RIMS1-218ENST00000522291 3876 ntTSL 5 BASIC12.63□□□□□ -0.39
SOX2P48431 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC12.63□□□□□ -0.39
SOX2P48431 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC12.63□□□□□ -0.39
SOX2P48431 POLD1-214ENST00000613923 3542 ntTSL 5 BASIC12.63□□□□□ -0.39
SOX2P48431 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC12.63□□□□□ -0.39
SOX2P48431 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 TPM3P8-201ENST00000330554 643 ntBASIC12.63□□□□□ -0.39
SOX2P48431 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
SOX2P48431 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC12.63□□□□□ -0.39
SOX2P48431 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC12.63□□□□□ -0.39
SOX2P48431 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC12.63□□□□□ -0.39
SOX2P48431 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
SOX2P48431 AQP6-203ENST00000551733 849 ntTSL 3 BASIC12.63□□□□□ -0.39
SOX2P48431 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC12.63□□□□□ -0.39
SOX2P48431 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC12.63□□□□□ -0.39
SOX2P48431 RN7SL48P-201ENST00000579283 293 ntBASIC12.63□□□□□ -0.39
SOX2P48431 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC12.63□□□□□ -0.39
SOX2P48431 AC023511.2-201ENST00000618803 211 ntBASIC12.63□□□□□ -0.39
SOX2P48431 OS9-218ENST00000551035 2246 ntTSL 2 BASIC12.63□□□□□ -0.39
SOX2P48431 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 CARS-214ENST00000529772 2637 ntTSL 2 BASIC12.63□□□□□ -0.39
SOX2P48431 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC12.63□□□□□ -0.39
SOX2P48431 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC12.63□□□□□ -0.39
SOX2P48431 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 TNNI1-202ENST00000361379 5413 ntAPPRIS P2 TSL 5 BASIC12.63□□□□□ -0.39
SOX2P48431 ADM2-202ENST00000395738 4276 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 GRIA4-201ENST00000282499 5508 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
SOX2P48431 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC12.63□□□□□ -0.39
SOX2P48431 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 STX3-207ENST00000633708 3111 ntTSL 5 BASIC12.63□□□□□ -0.39
SOX2P48431 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC12.63□□□□□ -0.39
SOX2P48431 INSRR-201ENST00000368195 5101 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 MYO7A-202ENST00000409709 7462 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
SOX2P48431 MTMR4-204ENST00000579925 5622 ntTSL 5 BASIC12.63□□□□□ -0.39
SOX2P48431 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 ADAMTSL2-201ENST00000354484 4068 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC12.62□□□□□ -0.39
SOX2P48431 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC12.62□□□□□ -0.39
SOX2P48431 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC12.62□□□□□ -0.39
SOX2P48431 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 DNAJC3-AS1-201ENST00000499499 2908 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 PRDM10-202ENST00000358825 6322 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 PRDM10-203ENST00000360871 6301 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 MAP4-204ENST00000395734 5590 ntAPPRIS ALT2 TSL 2 BASIC12.62□□□□□ -0.39
SOX2P48431 MYNN-201ENST00000349841 4999 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 POLG-202ENST00000442287 4487 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 OTP-201ENST00000306422 3669 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 SLC46A3-201ENST00000266943 3173 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 AL118506.1-201ENST00000601296 3082 ntBASIC12.62□□□□□ -0.39
SOX2P48431 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC12.62□□□□□ -0.39
SOX2P48431 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 EOGT-202ENST00000383701 4731 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC12.62□□□□□ -0.39
SOX2P48431 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
SOX2P48431 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
SOX2P48431 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms