Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 ASLP1-201ENST00000428790 637 ntBASIC16.2■□□□□ 0.18
SCN4AP35499 AL662899.2-201ENST00000503322 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SCN4AP35499 ROPN1L-AS1-201ENST00000513037 189 ntTSL 2 BASIC16.2■□□□□ 0.18
SCN4AP35499 AC009119.3-202ENST00000566773 196 ntTSL 3 BASIC16.2■□□□□ 0.18
SCN4AP35499 MDC1-209ENST00000613547 830 ntTSL 5 BASIC16.2■□□□□ 0.18
SCN4AP35499 AC099795.2-201ENST00000639582 440 ntBASIC16.2■□□□□ 0.18
SCN4AP35499 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SCN4AP35499 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SCN4AP35499 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SCN4AP35499 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SCN4AP35499 HSPA8-221ENST00000533540 1826 ntTSL 5 BASIC16.2■□□□□ 0.18
SCN4AP35499 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SCN4AP35499 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SCN4AP35499 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SCN4AP35499 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SCN4AP35499 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SCN4AP35499 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SCN4AP35499 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SCN4AP35499 AC013268.4-201ENST00000637413 2228 ntBASIC16.2■□□□□ 0.18
SCN4AP35499 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SCN4AP35499 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SCN4AP35499 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
SCN4AP35499 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SCN4AP35499 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SCN4AP35499 CCDC159-209ENST00000588790 1408 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SCN4AP35499 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SCN4AP35499 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
SCN4AP35499 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SCN4AP35499 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
SCN4AP35499 MYL3-201ENST00000292327 924 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SCN4AP35499 RPS6-201ENST00000315377 863 ntTSL 3 BASIC16.19■□□□□ 0.18
SCN4AP35499 NANOS3-202ENST00000397555 769 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SCN4AP35499 AC138392.1-201ENST00000427577 921 ntBASIC16.19■□□□□ 0.18
SCN4AP35499 SLC22A18AS-202ENST00000526203 664 ntAPPRIS P2 TSL 3 BASIC16.19■□□□□ 0.18
SCN4AP35499 GOLGA2P10-201ENST00000550961 817 ntBASIC16.19■□□□□ 0.18
SCN4AP35499 PGAP2-204ENST00000396991 1798 ntTSL 5 BASIC16.19■□□□□ 0.18
SCN4AP35499 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.19■□□□□ 0.18
SCN4AP35499 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.19■□□□□ 0.18
SCN4AP35499 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SCN4AP35499 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SCN4AP35499 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SCN4AP35499 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
SCN4AP35499 POLR2J2-203ENST00000476151 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SCN4AP35499 ATF4P4-201ENST00000393544 1930 ntBASIC16.19■□□□□ 0.18
SCN4AP35499 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SCN4AP35499 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC16.19■□□□□ 0.18
SCN4AP35499 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SCN4AP35499 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SCN4AP35499 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SCN4AP35499 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC16.19■□□□□ 0.18
SCN4AP35499 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SCN4AP35499 HRASLS2-201ENST00000255695 742 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
SCN4AP35499 MRPL55-210ENST00000366736 660 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
SCN4AP35499 S100A7A-202ENST00000368728 440 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
SCN4AP35499 AC064853.1-201ENST00000413096 540 ntTSL 4 BASIC16.19■□□□□ 0.18
SCN4AP35499 FTLP3-201ENST00000427242 528 ntBASIC16.19■□□□□ 0.18
SCN4AP35499 AC009517.1-201ENST00000454750 570 ntBASIC16.19■□□□□ 0.18
SCN4AP35499 SMCR2-201ENST00000456090 564 ntTSL 2 BASIC16.19■□□□□ 0.18
SCN4AP35499 HAX1-204ENST00000457918 914 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SCN4AP35499 ABCC6P2-201ENST00000526069 590 ntBASIC16.19■□□□□ 0.18
SCN4AP35499 AC025576.1-201ENST00000536455 462 ntTSL 5 BASIC16.19■□□□□ 0.18
SCN4AP35499 BCDIN3D-AS1-202ENST00000549124 468 ntTSL 3 BASIC16.19■□□□□ 0.18
SCN4AP35499 LINC00677-201ENST00000558224 486 ntTSL 3 BASIC16.19■□□□□ 0.18
SCN4AP35499 GABARAPL2-203ENST00000565057 571 ntTSL 2 BASIC16.19■□□□□ 0.18
SCN4AP35499 HNRNPA1P11-201ENST00000580106 956 ntBASIC16.19■□□□□ 0.18
SCN4AP35499 SMIM22-206ENST00000589327 629 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
SCN4AP35499 AC010319.4-201ENST00000593957 691 ntTSL 3 BASIC16.19■□□□□ 0.18
SCN4AP35499 FAM223B-202ENST00000598177 713 ntBASIC16.19■□□□□ 0.18
SCN4AP35499 FAM223A-202ENST00000625204 713 ntBASIC16.19■□□□□ 0.18
SCN4AP35499 AC005906.2-208ENST00000638655 1286 ntTSL 5 BASIC16.19■□□□□ 0.18
SCN4AP35499 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
SCN4AP35499 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
SCN4AP35499 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
SCN4AP35499 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
SCN4AP35499 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC16.19■□□□□ 0.18
SCN4AP35499 AC007431.1-201ENST00000578662 1412 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SCN4AP35499 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SCN4AP35499 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SCN4AP35499 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC16.18■□□□□ 0.18
SCN4AP35499 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SCN4AP35499 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
SCN4AP35499 CNGB1-202ENST00000311183 1633 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SCN4AP35499 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
SCN4AP35499 KRT8P24-201ENST00000560290 1559 ntBASIC16.18■□□□□ 0.18
SCN4AP35499 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SCN4AP35499 TPT1-201ENST00000309246 1008 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SCN4AP35499 KRTAP10-11-201ENST00000334670 1237 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
SCN4AP35499 TPM3P7-201ENST00000338274 732 ntBASIC16.18■□□□□ 0.18
SCN4AP35499 CD8B-202ENST00000349455 849 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
SCN4AP35499 PSMA7-202ENST00000370861 773 ntTSL 5 BASIC16.18■□□□□ 0.18
SCN4AP35499 FAM178B-201ENST00000393526 1004 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
SCN4AP35499 HMGN1P4-201ENST00000419500 290 ntBASIC16.18■□□□□ 0.18
SCN4AP35499 AP001092.1-201ENST00000433606 469 ntTSL 3 BASIC16.18■□□□□ 0.18
SCN4AP35499 AC006001.2-202ENST00000439360 508 ntTSL 3 BASIC16.18■□□□□ 0.18
SCN4AP35499 PRDX3P2-201ENST00000447051 611 ntBASIC16.18■□□□□ 0.18
SCN4AP35499 RN7SL76P-201ENST00000482435 289 ntBASIC16.18■□□□□ 0.18
SCN4AP35499 PDPN-208ENST00000509009 571 ntTSL 4 BASIC16.18■□□□□ 0.18
SCN4AP35499 AC090200.1-201ENST00000522918 590 ntTSL 2 BASIC16.18■□□□□ 0.18
SCN4AP35499 KRT18P8-201ENST00000581937 1246 ntBASIC16.18■□□□□ 0.18
SCN4AP35499 AC095350.1-204ENST00000585405 616 ntTSL 5 BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 154.8 ms