Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 MUC1-213ENST00000462215 1189 ntTSL 2 BASIC14.24□□□□□ -0.13
VCANP13611 AC007992.1-201ENST00000513953 953 ntBASIC14.24□□□□□ -0.13
VCANP13611 ZNF677-207ENST00000598806 701 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
VCANP13611 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC14.24□□□□□ -0.13
VCANP13611 SRPX-206ENST00000544439 1842 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
VCANP13611 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
VCANP13611 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.24□□□□□ -0.13
VCANP13611 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
VCANP13611 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VCANP13611 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
VCANP13611 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VCANP13611 ASPDH-201ENST00000376916 848 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
VCANP13611 AL121983.2-204ENST00000430592 448 ntTSL 3 BASIC14.24□□□□□ -0.13
VCANP13611 AC016304.1-201ENST00000476363 413 ntBASIC14.24□□□□□ -0.13
VCANP13611 AP001775.1-201ENST00000532608 586 ntBASIC14.24□□□□□ -0.13
VCANP13611 AC009061.2-204ENST00000602476 524 ntTSL 3 BASIC14.24□□□□□ -0.13
VCANP13611 SELENBP1-208ENST00000447402 1530 ntTSL 2 BASIC14.24□□□□□ -0.13
VCANP13611 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC14.24□□□□□ -0.13
VCANP13611 ZSCAN29-207ENST00000568898 1389 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
VCANP13611 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
VCANP13611 GSN-209ENST00000449733 2702 ntTSL 2 BASIC14.24□□□□□ -0.13
VCANP13611 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
VCANP13611 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.24□□□□□ -0.13
VCANP13611 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
VCANP13611 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VCANP13611 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
VCANP13611 SRSF10-205ENST00000374452 1194 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VCANP13611 PLA2G1B-202ENST00000423423 423 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VCANP13611 TMEM256P1-201ENST00000430550 340 ntBASIC14.23□□□□□ -0.13
VCANP13611 BX284656.1-201ENST00000446364 668 ntTSL 3 BASIC14.23□□□□□ -0.13
VCANP13611 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC14.23□□□□□ -0.13
VCANP13611 FXYD3-212ENST00000605550 590 ntTSL 4 BASIC14.23□□□□□ -0.13
VCANP13611 AC116036.2-201ENST00000607592 462 ntBASIC14.23□□□□□ -0.13
VCANP13611 AC021146.12-201ENST00000608365 477 ntTSL 2 BASIC14.23□□□□□ -0.13
VCANP13611 AC138907.9-201ENST00000623747 986 ntBASIC14.23□□□□□ -0.13
VCANP13611 PUDPP2-202ENST00000628080 737 ntTSL 5 BASIC14.23□□□□□ -0.13
VCANP13611 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
VCANP13611 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
VCANP13611 AC023024.2-201ENST00000623561 1993 ntBASIC14.23□□□□□ -0.13
VCANP13611 MCOLN3-201ENST00000341115 1762 ntTSL 2 BASIC14.23□□□□□ -0.13
VCANP13611 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VCANP13611 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
VCANP13611 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
VCANP13611 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VCANP13611 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VCANP13611 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VCANP13611 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC14.23□□□□□ -0.13
VCANP13611 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
VCANP13611 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VCANP13611 KLK8-203ENST00000347619 555 ntTSL 2 BASIC14.23□□□□□ -0.13
VCANP13611 AC006987.1-201ENST00000413610 527 ntBASIC14.23□□□□□ -0.13
VCANP13611 GGT8P-201ENST00000418938 532 ntBASIC14.23□□□□□ -0.13
VCANP13611 AC098649.1-201ENST00000427258 569 ntTSL 4 BASIC14.23□□□□□ -0.13
VCANP13611 FPGT-205ENST00000482102 561 ntTSL 4 BASIC14.23□□□□□ -0.13
VCANP13611 AC112250.1-201ENST00000504640 745 ntBASIC14.23□□□□□ -0.13
VCANP13611 AC003965.2-201ENST00000577140 265 ntTSL 3 BASIC14.23□□□□□ -0.13
VCANP13611 MGST3-214ENST00000627653 1130 ntTSL 5 BASIC14.23□□□□□ -0.13
VCANP13611 FBXO34-201ENST00000313833 3464 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VCANP13611 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VCANP13611 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VCANP13611 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
VCANP13611 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VCANP13611 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VCANP13611 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VCANP13611 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VCANP13611 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.23□□□□□ -0.13
VCANP13611 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VCANP13611 RPSAP69-201ENST00000445739 546 ntTSL 4 BASIC14.23□□□□□ -0.13
VCANP13611 AC015818.1-201ENST00000451011 244 ntBASIC14.23□□□□□ -0.13
VCANP13611 DDX11L8-201ENST00000535849 366 ntBASIC14.23□□□□□ -0.13
VCANP13611 FP325317.1-201ENST00000539936 1042 ntBASIC14.23□□□□□ -0.13
VCANP13611 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VCANP13611 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VCANP13611 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
VCANP13611 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VCANP13611 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC14.23□□□□□ -0.13
VCANP13611 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
VCANP13611 LINC02433-202ENST00000507108 1395 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
VCANP13611 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VCANP13611 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VCANP13611 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VCANP13611 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC14.22□□□□□ -0.13
VCANP13611 AC023590.1-202ENST00000366457 781 ntTSL 3 BASIC14.22□□□□□ -0.13
VCANP13611 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VCANP13611 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VCANP13611 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.22□□□□□ -0.13
VCANP13611 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VCANP13611 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VCANP13611 TBC1D27-202ENST00000424239 1573 ntBASIC14.22□□□□□ -0.13
VCANP13611 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
VCANP13611 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VCANP13611 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
VCANP13611 PIGL-202ENST00000395844 1257 ntTSL 5 BASIC14.22□□□□□ -0.13
VCANP13611 AC234771.1-201ENST00000416873 250 ntTSL 2 BASIC14.22□□□□□ -0.13
VCANP13611 AP005273.1-201ENST00000444862 522 ntTSL 3 BASIC14.22□□□□□ -0.13
VCANP13611 AL031773.1-201ENST00000453579 554 ntTSL 3 BASIC14.22□□□□□ -0.13
VCANP13611 EEF1GP1-201ENST00000457231 1299 ntBASIC14.22□□□□□ -0.13
VCANP13611 RN7SL22P-201ENST00000471800 269 ntBASIC14.22□□□□□ -0.13
VCANP13611 IGKV3-11-201ENST00000483158 392 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
VCANP13611 AC140658.4-201ENST00000561990 352 ntBASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms