Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
CLDN9O95484 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC13.82□□□□□ -0.2
CLDN9O95484 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLDN9O95484 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC13.82□□□□□ -0.2
CLDN9O95484 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLDN9O95484 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLDN9O95484 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CLDN9O95484 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC13.82□□□□□ -0.2
CLDN9O95484 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLDN9O95484 OR2R1P-201ENST00000441404 914 ntBASIC13.82□□□□□ -0.2
CLDN9O95484 ATP6V0CP2-201ENST00000469409 207 ntBASIC13.82□□□□□ -0.2
CLDN9O95484 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLDN9O95484 RPL18P13-201ENST00000478088 569 ntBASIC13.82□□□□□ -0.2
CLDN9O95484 RPSAP36-202ENST00000494591 1261 ntBASIC13.82□□□□□ -0.2
CLDN9O95484 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
CLDN9O95484 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLDN9O95484 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC13.82□□□□□ -0.2
CLDN9O95484 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC13.82□□□□□ -0.2
CLDN9O95484 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC13.82□□□□□ -0.2
CLDN9O95484 SCARNA21-201ENST00000517026 139 ntBASIC13.82□□□□□ -0.2
CLDN9O95484 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLDN9O95484 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC13.82□□□□□ -0.2
CLDN9O95484 AC005324.6-201ENST00000587972 613 ntBASIC13.82□□□□□ -0.2
CLDN9O95484 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CLDN9O95484 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
CLDN9O95484 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLDN9O95484 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLDN9O95484 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLDN9O95484 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLDN9O95484 MRFAP1-202ENST00000382581 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLDN9O95484 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLDN9O95484 CICP17-201ENST00000418553 2377 ntBASIC13.82□□□□□ -0.2
CLDN9O95484 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
CLDN9O95484 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
CLDN9O95484 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC13.82□□□□□ -0.2
CLDN9O95484 STK3-218ENST00000617590 2485 ntTSL 5 BASIC13.82□□□□□ -0.2
CLDN9O95484 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC13.82□□□□□ -0.2
CLDN9O95484 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
CLDN9O95484 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC13.82□□□□□ -0.2
CLDN9O95484 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
CLDN9O95484 AC018629.1-201ENST00000623381 1736 ntBASIC13.81□□□□□ -0.2
CLDN9O95484 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CLDN9O95484 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CLDN9O95484 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLDN9O95484 CKMT2-203ENST00000437669 1479 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CLDN9O95484 AC061965.1-201ENST00000560524 1465 ntBASIC13.81□□□□□ -0.2
CLDN9O95484 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC13.81□□□□□ -0.2
CLDN9O95484 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
CLDN9O95484 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLDN9O95484 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
CLDN9O95484 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC13.81□□□□□ -0.2
CLDN9O95484 INF2-209ENST00000617571 2956 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLDN9O95484 PVR-205ENST00000425690 3325 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLDN9O95484 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLDN9O95484 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLDN9O95484 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC13.81□□□□□ -0.2
CLDN9O95484 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLDN9O95484 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLDN9O95484 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC13.81□□□□□ -0.2
CLDN9O95484 AC046130.1-201ENST00000501954 2179 ntTSL 5 BASIC13.81□□□□□ -0.2
CLDN9O95484 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC13.81□□□□□ -0.2
CLDN9O95484 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLDN9O95484 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CLDN9O95484 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLDN9O95484 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLDN9O95484 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLDN9O95484 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC13.81□□□□□ -0.2
CLDN9O95484 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLDN9O95484 XBP1P1-201ENST00000436573 652 ntBASIC13.81□□□□□ -0.2
CLDN9O95484 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLDN9O95484 AC119751.2-201ENST00000504529 210 ntBASIC13.81□□□□□ -0.2
CLDN9O95484 AC022182.2-201ENST00000525556 859 ntTSL 2 BASIC13.81□□□□□ -0.2
CLDN9O95484 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC13.81□□□□□ -0.2
CLDN9O95484 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC13.81□□□□□ -0.2
CLDN9O95484 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC13.81□□□□□ -0.2
CLDN9O95484 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC13.81□□□□□ -0.2
CLDN9O95484 AC005730.2-201ENST00000564549 1184 ntBASIC13.81□□□□□ -0.2
CLDN9O95484 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC13.81□□□□□ -0.2
CLDN9O95484 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC13.81□□□□□ -0.2
CLDN9O95484 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC13.81□□□□□ -0.2
CLDN9O95484 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC13.81□□□□□ -0.2
CLDN9O95484 AC017083.2-201ENST00000608069 979 ntBASIC13.81□□□□□ -0.2
CLDN9O95484 CR392039.2-201ENST00000623182 509 ntBASIC13.81□□□□□ -0.2
CLDN9O95484 DDX5-235ENST00000630471 473 ntTSL 4 BASIC13.81□□□□□ -0.2
CLDN9O95484 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC13.81□□□□□ -0.2
CLDN9O95484 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLDN9O95484 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLDN9O95484 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLDN9O95484 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLDN9O95484 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLDN9O95484 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
CLDN9O95484 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
CLDN9O95484 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CLDN9O95484 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC13.81□□□□□ -0.2
CLDN9O95484 BARX1-AS1-201ENST00000453045 1445 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CLDN9O95484 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC13.81□□□□□ -0.2
CLDN9O95484 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC13.8□□□□□ -0.2
CLDN9O95484 USP51-201ENST00000500968 4407 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CLDN9O95484 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC13.8□□□□□ -0.2
CLDN9O95484 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms