Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC4Q92889 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
ERCC4Q92889 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC4Q92889 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
ERCC4Q92889 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC4Q92889 HINT3-201ENST00000229633 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC4Q92889 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
ERCC4Q92889 GOLGA8EP-201ENST00000530246 1959 ntBASIC16.26■□□□□ 0.19
ERCC4Q92889 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC4Q92889 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC4Q92889 AL354989.2-201ENST00000435838 1540 ntBASIC16.26■□□□□ 0.19
ERCC4Q92889 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC4Q92889 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC4Q92889 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC16.26■□□□□ 0.19
ERCC4Q92889 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC4Q92889 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC4Q92889 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC4Q92889 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC4Q92889 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC16.26■□□□□ 0.19
ERCC4Q92889 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC16.26■□□□□ 0.19
ERCC4Q92889 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC16.26■□□□□ 0.19
ERCC4Q92889 INE1-201ENST00000456273 945 ntBASIC16.26■□□□□ 0.19
ERCC4Q92889 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC4Q92889 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC16.26■□□□□ 0.19
ERCC4Q92889 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC16.26■□□□□ 0.19
ERCC4Q92889 COQ6-210ENST00000554920 649 ntTSL 3 BASIC16.26■□□□□ 0.19
ERCC4Q92889 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC16.26■□□□□ 0.19
ERCC4Q92889 KLK3-207ENST00000595952 969 ntTSL 3 BASIC16.26■□□□□ 0.19
ERCC4Q92889 AC027601.3-201ENST00000622907 509 ntBASIC16.26■□□□□ 0.19
ERCC4Q92889 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC4Q92889 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC16.26■□□□□ 0.19
ERCC4Q92889 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC16.26■□□□□ 0.19
ERCC4Q92889 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
ERCC4Q92889 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
ERCC4Q92889 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC4Q92889 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC4Q92889 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC4Q92889 TMEM130-201ENST00000339375 3015 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC4Q92889 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC4Q92889 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC16.26■□□□□ 0.19
ERCC4Q92889 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC16.26■□□□□ 0.19
ERCC4Q92889 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ERCC4Q92889 TMPRSS12-202ENST00000551456 3336 ntTSL 2 BASIC16.25■□□□□ 0.19
ERCC4Q92889 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC16.25■□□□□ 0.19
ERCC4Q92889 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 CR383656.2-201ENST00000548656 2254 ntBASIC16.25■□□□□ 0.19
ERCC4Q92889 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC16.25■□□□□ 0.19
ERCC4Q92889 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
ERCC4Q92889 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 ACTR10-201ENST00000254286 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
ERCC4Q92889 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 CNTN2-201ENST00000331830 7999 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 DCAF10-202ENST00000377724 3862 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC16.25■□□□□ 0.19
ERCC4Q92889 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 GRAP-202ENST00000395635 834 ntTSL 2 BASIC16.25■□□□□ 0.19
ERCC4Q92889 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC16.25■□□□□ 0.19
ERCC4Q92889 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC16.25■□□□□ 0.19
ERCC4Q92889 RN7SL713P-201ENST00000582127 302 ntBASIC16.25■□□□□ 0.19
ERCC4Q92889 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC16.25■□□□□ 0.19
ERCC4Q92889 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.25■□□□□ 0.19
ERCC4Q92889 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 AC138951.2-201ENST00000623455 1161 ntBASIC16.25■□□□□ 0.19
ERCC4Q92889 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC16.25■□□□□ 0.19
ERCC4Q92889 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC16.25■□□□□ 0.19
ERCC4Q92889 TMEM130-203ENST00000416379 2881 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC16.25■□□□□ 0.19
ERCC4Q92889 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC16.25■□□□□ 0.19
ERCC4Q92889 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
ERCC4Q92889 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
ERCC4Q92889 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 AAR2-201ENST00000320849 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 FAS-202ENST00000352159 1722 ntTSL 5 BASIC16.25■□□□□ 0.19
ERCC4Q92889 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ERCC4Q92889 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
ERCC4Q92889 REV3L-207ENST00000435970 10943 ntTSL 2 BASIC16.25■□□□□ 0.19
ERCC4Q92889 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC4Q92889 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC4Q92889 PTK7-205ENST00000352931 4023 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC4Q92889 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC16.24■□□□□ 0.19
ERCC4Q92889 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC16.24■□□□□ 0.19
ERCC4Q92889 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC4Q92889 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC4Q92889 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC4Q92889 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ERCC4Q92889 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms