Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RHPN1-AS1-201ENST00000518049 1918 ntBASIC13.68□□□□□ -0.22
MSX2P35548 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX2P35548 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC13.68□□□□□ -0.22
MSX2P35548 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX2P35548 FKBP4P6-201ENST00000457486 1332 ntBASIC13.68□□□□□ -0.22
MSX2P35548 ZNF595-205ENST00000610261 2911 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX2P35548 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
MSX2P35548 HECTD2-201ENST00000298068 4802 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX2P35548 IMMT-204ENST00000410111 3001 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX2P35548 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC13.68□□□□□ -0.22
MSX2P35548 TMEM100-201ENST00000424486 1747 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX2P35548 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MSX2P35548 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX2P35548 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX2P35548 SPDYE19P-201ENST00000338590 713 ntBASIC13.68□□□□□ -0.22
MSX2P35548 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MSX2P35548 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MSX2P35548 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC13.68□□□□□ -0.22
MSX2P35548 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX2P35548 MIR943-201ENST00000401286 94 ntBASIC13.68□□□□□ -0.22
MSX2P35548 MIR1233-2-201ENST00000408138 82 ntBASIC13.68□□□□□ -0.22
MSX2P35548 MIR1233-1-201ENST00000408722 82 ntBASIC13.68□□□□□ -0.22
MSX2P35548 ARSEP1-201ENST00000420443 635 ntBASIC13.68□□□□□ -0.22
MSX2P35548 FAM212B-AS1-201ENST00000430373 2131 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MSX2P35548 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC13.68□□□□□ -0.22
MSX2P35548 AL391280.1-201ENST00000506969 1062 ntBASIC13.68□□□□□ -0.22
MSX2P35548 DOC2GP-202ENST00000514950 1163 ntBASIC13.68□□□□□ -0.22
MSX2P35548 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
MSX2P35548 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC13.68□□□□□ -0.22
MSX2P35548 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC13.68□□□□□ -0.22
MSX2P35548 AP005019.2-201ENST00000615104 511 ntBASIC13.68□□□□□ -0.22
MSX2P35548 AC008761.3-201ENST00000624803 892 ntBASIC13.68□□□□□ -0.22
MSX2P35548 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC13.68□□□□□ -0.22
MSX2P35548 AC134684.3-201ENST00000641758 218 ntBASIC13.68□□□□□ -0.22
MSX2P35548 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX2P35548 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
MSX2P35548 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC13.68□□□□□ -0.22
MSX2P35548 NEXN-201ENST00000330010 3195 ntTSL 2 BASIC13.68□□□□□ -0.22
MSX2P35548 KCNH4-202ENST00000607371 3723 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
MSX2P35548 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
MSX2P35548 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC13.68□□□□□ -0.22
MSX2P35548 ANO6-203ENST00000425752 3558 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX2P35548 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX2P35548 ZBED8-201ENST00000408953 2851 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
MSX2P35548 UBE2I-202ENST00000355803 3253 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
MSX2P35548 SRSF1-205ENST00000582730 3117 ntTSL 2 BASIC13.68□□□□□ -0.22
MSX2P35548 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX2P35548 ABCD1P2-201ENST00000429313 1601 ntBASIC13.68□□□□□ -0.22
MSX2P35548 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
MSX2P35548 TMPRSS2-201ENST00000332149 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
MSX2P35548 AC024075.2-201ENST00000598112 1473 ntBASIC13.67□□□□□ -0.22
MSX2P35548 CYP2J2-201ENST00000371204 1896 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC13.67□□□□□ -0.22
MSX2P35548 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
MSX2P35548 KCNIP3-201ENST00000295225 2940 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 TBC1D3L-201ENST00000612727 2148 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 ZNF263-202ENST00000538765 1721 ntTSL 2 BASIC13.67□□□□□ -0.22
MSX2P35548 LLGL1-203ENST00000621229 3187 ntTSL 5 BASIC13.67□□□□□ -0.22
MSX2P35548 MTSS1-201ENST00000325064 2777 ntTSL 2 BASIC13.67□□□□□ -0.22
MSX2P35548 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC13.67□□□□□ -0.22
MSX2P35548 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 ITGA3-201ENST00000007722 3665 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
MSX2P35548 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
MSX2P35548 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
MSX2P35548 OS9-203ENST00000389142 2457 ntTSL 5 BASIC13.67□□□□□ -0.22
MSX2P35548 USP39-207ENST00000450066 2086 ntTSL 2 BASIC13.67□□□□□ -0.22
MSX2P35548 AL731571.1-201ENST00000617058 5428 ntBASIC13.67□□□□□ -0.22
MSX2P35548 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 ITPRIPL1-204ENST00000439118 1946 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
MSX2P35548 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC13.67□□□□□ -0.22
MSX2P35548 AC016730.1-201ENST00000420828 832 ntTSL 2 BASIC13.67□□□□□ -0.22
MSX2P35548 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC13.67□□□□□ -0.22
MSX2P35548 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC13.67□□□□□ -0.22
MSX2P35548 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC13.67□□□□□ -0.22
MSX2P35548 GNAQP1-201ENST00000444815 1067 ntBASIC13.67□□□□□ -0.22
MSX2P35548 MYCLP2-201ENST00000449268 967 ntBASIC13.67□□□□□ -0.22
MSX2P35548 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC13.67□□□□□ -0.22
MSX2P35548 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC13.67□□□□□ -0.22
MSX2P35548 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC13.67□□□□□ -0.22
MSX2P35548 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 AC025678.2-201ENST00000562061 970 ntBASIC13.67□□□□□ -0.22
MSX2P35548 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC13.67□□□□□ -0.22
MSX2P35548 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC13.67□□□□□ -0.22
MSX2P35548 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC13.67□□□□□ -0.22
MSX2P35548 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC13.67□□□□□ -0.22
MSX2P35548 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC13.67□□□□□ -0.22
MSX2P35548 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC13.67□□□□□ -0.22
MSX2P35548 AC005252.2-201ENST00000624630 1141 ntBASIC13.67□□□□□ -0.22
MSX2P35548 MVK-217ENST00000639206 367 ntTSL 5 BASIC13.67□□□□□ -0.22
MSX2P35548 CYP4F3-201ENST00000221307 5050 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX2P35548 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 62.8 ms