Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
SCN4AP35499 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCN4AP35499 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC16.23■□□□□ 0.19
SCN4AP35499 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SCN4AP35499 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC16.22■□□□□ 0.19
SCN4AP35499 LINC00324-201ENST00000315707 2082 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 LYG2-201ENST00000333017 862 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SCN4AP35499 MT-ND6-201ENST00000361681 525 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
SCN4AP35499 NPPB-201ENST00000376468 694 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 TMEM256P1-201ENST00000430550 340 ntBASIC16.22■□□□□ 0.19
SCN4AP35499 HDHD5-AS1-202ENST00000431923 616 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 IDI2-AS1-204ENST00000437374 896 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 AC006059.1-201ENST00000438017 722 ntTSL 5 BASIC16.22■□□□□ 0.19
SCN4AP35499 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC16.22■□□□□ 0.19
SCN4AP35499 NPTN-205ENST00000563691 1214 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 AC006486.2-201ENST00000624246 2199 ntBASIC16.22■□□□□ 0.19
SCN4AP35499 TUBB8P4-201ENST00000511806 1324 ntBASIC16.22■□□□□ 0.19
SCN4AP35499 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 SPC25-201ENST00000282074 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 SLC36A1-211ENST00000616007 1389 ntTSL 2 BASIC16.22■□□□□ 0.19
SCN4AP35499 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SCN4AP35499 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SCN4AP35499 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.22■□□□□ 0.19
SCN4AP35499 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.22■□□□□ 0.19
SCN4AP35499 OR52N1-201ENST00000317078 963 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
SCN4AP35499 CACYBPP3-201ENST00000406011 625 ntBASIC16.22■□□□□ 0.19
SCN4AP35499 CHN2-214ENST00000439711 755 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 PLAC9P1-203ENST00000440031 223 ntBASIC16.22■□□□□ 0.19
SCN4AP35499 AL137077.1-201ENST00000442115 528 ntBASIC16.22■□□□□ 0.19
SCN4AP35499 HTATIP2-203ENST00000443524 967 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SCN4AP35499 H1FOO-202ENST00000503977 881 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 AC105424.1-201ENST00000514583 209 ntBASIC16.22■□□□□ 0.19
SCN4AP35499 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC16.22■□□□□ 0.19
SCN4AP35499 IL32-230ENST00000551122 733 ntAPPRIS ALT2 TSL 3 BASIC16.22■□□□□ 0.19
SCN4AP35499 FOS-205ENST00000555242 629 ntTSL 2 BASIC16.22■□□□□ 0.19
SCN4AP35499 GMFG-206ENST00000597595 758 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 CSH2-207ENST00000613718 666 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SCN4AP35499 AC245427.1-201ENST00000633705 760 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
SCN4AP35499 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SCN4AP35499 AC099063.4-201ENST00000641099 1602 ntBASIC16.21■□□□□ 0.19
SCN4AP35499 SLC25A3-202ENST00000228318 1678 ntAPPRIS P4 TSL 5 BASIC16.21■□□□□ 0.19
SCN4AP35499 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SCN4AP35499 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SCN4AP35499 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.21■□□□□ 0.19
SCN4AP35499 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
SCN4AP35499 AC091951.1-201ENST00000512854 2465 ntBASIC16.21■□□□□ 0.19
SCN4AP35499 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SCN4AP35499 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SCN4AP35499 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
SCN4AP35499 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.21■□□□□ 0.19
SCN4AP35499 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SCN4AP35499 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
SCN4AP35499 LINC00554-201ENST00000564841 3011 ntBASIC16.21■□□□□ 0.19
SCN4AP35499 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SCN4AP35499 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SCN4AP35499 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
SCN4AP35499 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SCN4AP35499 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
SCN4AP35499 BPIFB1-201ENST00000253354 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SCN4AP35499 GLDC-216ENST00000639639 1559 ntTSL 3 BASIC16.21■□□□□ 0.19
SCN4AP35499 KIR2DL4-203ENST00000357494 1396 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
SCN4AP35499 IQCF1-201ENST00000310914 695 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SCN4AP35499 MIR766-201ENST00000390223 111 ntBASIC16.21■□□□□ 0.19
SCN4AP35499 SPTLC1P3-201ENST00000403408 259 ntBASIC16.21■□□□□ 0.19
SCN4AP35499 AL627095.1-201ENST00000414775 321 ntBASIC16.21■□□□□ 0.19
SCN4AP35499 RPL35P1-201ENST00000450819 370 ntBASIC16.21■□□□□ 0.19
SCN4AP35499 CST7-201ENST00000480798 930 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SCN4AP35499 AL136298.3-201ENST00000556746 445 ntBASIC16.21■□□□□ 0.19
SCN4AP35499 AC025219.1-201ENST00000559299 526 ntTSL 4 BASIC16.21■□□□□ 0.19
SCN4AP35499 AC114296.1-202ENST00000638019 771 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
SCN4AP35499 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
SCN4AP35499 AC132872.4-202ENST00000622924 2756 ntBASIC16.21■□□□□ 0.19
SCN4AP35499 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
SCN4AP35499 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.21■□□□□ 0.18
SCN4AP35499 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
SCN4AP35499 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC16.2■□□□□ 0.18
SCN4AP35499 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SCN4AP35499 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
SCN4AP35499 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.2■□□□□ 0.18
SCN4AP35499 ASMT-203ENST00000381241 1388 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SCN4AP35499 AC005519.2-201ENST00000554532 1367 ntTSL 4 BASIC16.2■□□□□ 0.18
SCN4AP35499 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SCN4AP35499 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
SCN4AP35499 SGCA-202ENST00000344627 1057 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
SCN4AP35499 FANK1-203ENST00000368693 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
SCN4AP35499 ZNF684-201ENST00000372696 1009 ntTSL 3 BASIC16.2■□□□□ 0.18
SCN4AP35499 GRP-202ENST00000420468 579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms