Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A3P12111 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A3P12111 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A3P12111 LINC01115-202ENST00000621134 1519 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A3P12111 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A3P12111 PAGE4-202ENST00000376141 487 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
COL6A3P12111 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A3P12111 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC14.2□□□□□ -0.14
COL6A3P12111 CACYBPP3-201ENST00000406011 625 ntBASIC14.2□□□□□ -0.14
COL6A3P12111 CFAP36-205ENST00000407816 1125 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
COL6A3P12111 UBE2D3-221ENST00000507845 577 ntTSL 4 BASIC14.2□□□□□ -0.14
COL6A3P12111 AC025259.1-201ENST00000550301 647 ntTSL 3 BASIC14.2□□□□□ -0.14
COL6A3P12111 LINC02328-202ENST00000554647 522 ntTSL 4 BASIC14.2□□□□□ -0.14
COL6A3P12111 Metazoa_SRP.82-201ENST00000611637 265 ntBASIC14.2□□□□□ -0.14
COL6A3P12111 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC14.2□□□□□ -0.14
COL6A3P12111 AP006621.5-202ENST00000623692 636 ntBASIC14.2□□□□□ -0.14
COL6A3P12111 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.2□□□□□ -0.14
COL6A3P12111 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
COL6A3P12111 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
COL6A3P12111 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A3P12111 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
COL6A3P12111 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
COL6A3P12111 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A3P12111 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC14.2□□□□□ -0.14
COL6A3P12111 YAE1D1-201ENST00000223273 899 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A3P12111 AL137028.1-201ENST00000620521 555 ntBASIC14.2□□□□□ -0.14
COL6A3P12111 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A3P12111 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL6A3P12111 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC14.2□□□□□ -0.14
COL6A3P12111 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC14.19□□□□□ -0.14
COL6A3P12111 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A3P12111 NBEAP3-201ENST00000420638 1493 ntBASIC14.19□□□□□ -0.14
COL6A3P12111 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.19□□□□□ -0.14
COL6A3P12111 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC14.19□□□□□ -0.14
COL6A3P12111 AL138885.2-201ENST00000420389 539 ntTSL 3 BASIC14.19□□□□□ -0.14
COL6A3P12111 GRP-202ENST00000420468 579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A3P12111 AC073578.1-201ENST00000535133 493 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A3P12111 AC025219.1-201ENST00000559299 526 ntTSL 4 BASIC14.19□□□□□ -0.14
COL6A3P12111 AFMID-205ENST00000586731 550 ntTSL 3 BASIC14.19□□□□□ -0.14
COL6A3P12111 MIF4GD-214ENST00000618645 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A3P12111 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
COL6A3P12111 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A3P12111 AL512488.1-201ENST00000433544 1671 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A3P12111 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A3P12111 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A3P12111 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC14.19□□□□□ -0.14
COL6A3P12111 CTRL-205ENST00000574481 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A3P12111 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A3P12111 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A3P12111 OR2A5-201ENST00000408906 1013 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
COL6A3P12111 AC137932.2-201ENST00000562995 1205 ntTSL 2 BASIC14.19□□□□□ -0.14
COL6A3P12111 AC138430.2-201ENST00000624068 504 ntBASIC14.19□□□□□ -0.14
COL6A3P12111 LINC02154-201ENST00000412485 1497 ntTSL 2 BASIC14.19□□□□□ -0.14
COL6A3P12111 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A3P12111 IDH3A-207ENST00000558554 1595 ntTSL 2 BASIC14.19□□□□□ -0.14
COL6A3P12111 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A3P12111 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
COL6A3P12111 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
COL6A3P12111 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC14.19□□□□□ -0.14
COL6A3P12111 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A3P12111 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A3P12111 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A3P12111 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC14.18□□□□□ -0.14
COL6A3P12111 POLR2F-202ENST00000405557 560 ntTSL 5 BASIC14.18□□□□□ -0.14
COL6A3P12111 CHN2-214ENST00000439711 755 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A3P12111 AC079250.1-201ENST00000456046 531 ntBASIC14.18□□□□□ -0.14
COL6A3P12111 AC109466.1-201ENST00000517508 804 ntTSL 4 BASIC14.18□□□□□ -0.14
COL6A3P12111 AC044802.2-201ENST00000551187 434 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A3P12111 MPHOSPH6-203ENST00000563504 617 ntTSL 2 BASIC14.18□□□□□ -0.14
COL6A3P12111 LINC02130-201ENST00000566054 518 ntTSL 2 BASIC14.18□□□□□ -0.14
COL6A3P12111 AC140658.2-201ENST00000566360 348 ntBASIC14.18□□□□□ -0.14
COL6A3P12111 POLR2F-213ENST00000606538 760 ntTSL 2 BASIC14.18□□□□□ -0.14
COL6A3P12111 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC14.18□□□□□ -0.14
COL6A3P12111 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A3P12111 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A3P12111 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A3P12111 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A3P12111 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A3P12111 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A3P12111 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A3P12111 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A3P12111 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A3P12111 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
COL6A3P12111 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A3P12111 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A3P12111 ANAPC15-203ENST00000502597 1481 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A3P12111 AL139220.1-201ENST00000436802 520 ntBASIC14.18□□□□□ -0.14
COL6A3P12111 AL662797.1-201ENST00000442852 799 ntTSL 3 BASIC14.18□□□□□ -0.14
COL6A3P12111 AC103925.1-201ENST00000453155 771 ntTSL 3 BASIC14.18□□□□□ -0.14
COL6A3P12111 STMN4-203ENST00000519614 1273 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A3P12111 IFI27L1-209ENST00000555523 680 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
COL6A3P12111 ZNF548-207ENST00000597400 589 ntTSL 3 BASIC14.18□□□□□ -0.14
COL6A3P12111 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC14.18□□□□□ -0.14
COL6A3P12111 MIR8071-1-201ENST00000616769 65 ntBASIC14.18□□□□□ -0.14
COL6A3P12111 MIR8071-2-201ENST00000616772 65 ntBASIC14.18□□□□□ -0.14
COL6A3P12111 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A3P12111 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
COL6A3P12111 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
COL6A3P12111 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
COL6A3P12111 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms