Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 AC128688.1-201ENST00000487626 519 ntBASIC8.8□□□□□ -1
LINC00643Q86TS7 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC8.8□□□□□ -1
LINC00643Q86TS7 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC8.8□□□□□ -1
LINC00643Q86TS7 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC8.8□□□□□ -1
LINC00643Q86TS7 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC8.8□□□□□ -1
LINC00643Q86TS7 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC8.8□□□□□ -1
LINC00643Q86TS7 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC8.8□□□□□ -1
LINC00643Q86TS7 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC8.8□□□□□ -1
LINC00643Q86TS7 AC124864.1-201ENST00000623408 392 ntBASIC8.8□□□□□ -1
LINC00643Q86TS7 RALB-208ENST00000631312 311 ntTSL 5 BASIC8.8□□□□□ -1
LINC00643Q86TS7 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 HFE2-206ENST00000634927 506 ntTSL 4 BASIC8.8□□□□□ -1
LINC00643Q86TS7 SEPT9-205ENST00000427674 3937 ntTSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC8.8□□□□□ -1
LINC00643Q86TS7 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC8.8□□□□□ -1
LINC00643Q86TS7 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC8.8□□□□□ -1
LINC00643Q86TS7 RBM4-201ENST00000310092 1694 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 NLRP1-201ENST00000262467 5131 ntTSL 5 BASIC8.8□□□□□ -1
LINC00643Q86TS7 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC8.8□□□□□ -1
LINC00643Q86TS7 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC8.8□□□□□ -1
LINC00643Q86TS7 ELP2-221ENST00000542824 2288 ntTSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 LINC00969-213ENST00000445707 2363 ntTSL 2 BASIC8.8□□□□□ -1
LINC00643Q86TS7 LINC00452-202ENST00000609661 2896 ntTSL 5 BASIC8.8□□□□□ -1
LINC00643Q86TS7 ROBO4-208ENST00000533054 3071 ntTSL 2 BASIC8.8□□□□□ -1
LINC00643Q86TS7 PLAGL1-209ENST00000444202 3197 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 ACBD5-203ENST00000375901 3685 ntTSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 SUN2-202ENST00000405510 4055 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 GOLGA6L4-203ENST00000510439 4563 ntAPPRIS P2 TSL 5 BASIC8.8□□□□□ -1
LINC00643Q86TS7 TLK1-205ENST00000431350 5663 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 BRD4-203ENST00000371835 4624 ntAPPRIS ALT2 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 SYPL2-201ENST00000369872 3624 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 ANKRD27-204ENST00000587352 3301 ntTSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 ZKSCAN1-202ENST00000426572 2011 ntTSL 2 BASIC8.8□□□□□ -1
LINC00643Q86TS7 RBMY1E-203ENST00000382659 1921 ntAPPRIS P5 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 RBMY1D-202ENST00000382680 1921 ntAPPRIS P5 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 RBMY1A1-203ENST00000382707 1921 ntAPPRIS P5 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 RBMY1B-202ENST00000383020 1921 ntAPPRIS P5 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 FLNB-201ENST00000295956 9463 ntAPPRIS P3 TSL 1 (best) BASIC8.8□□□□□ -1
LINC00643Q86TS7 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC8.8□□□□□ -1
LINC00643Q86TS7 THUMPD3-206ENST00000452837 2877 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 KLF6-207ENST00000542957 4537 ntTSL 5 BASIC8.79□□□□□ -1
LINC00643Q86TS7 C14orf159-203ENST00000412671 2591 ntAPPRIS ALT1 TSL 5 BASIC8.79□□□□□ -1
LINC00643Q86TS7 PEG10-203ENST00000488574 2587 ntTSL 2 BASIC8.79□□□□□ -1
LINC00643Q86TS7 KDM8-201ENST00000286096 2462 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 RCAN1-214ENST00000620920 2257 ntTSL 4 BASIC8.79□□□□□ -1
LINC00643Q86TS7 KCNMB1-201ENST00000274629 5052 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 TLE3-222ENST00000560589 3509 ntTSL 5 BASIC8.79□□□□□ -1
LINC00643Q86TS7 KLHL38-201ENST00000325995 1982 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 KLF4-206ENST00000610832 1956 ntTSL 5 BASIC8.79□□□□□ -1
LINC00643Q86TS7 AL356130.1-201ENST00000620188 1965 ntTSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 LINC00303-201ENST00000367207 1891 ntTSL 2 BASIC8.79□□□□□ -1
LINC00643Q86TS7 LDLR-207ENST00000558013 3144 ntAPPRIS ALT2 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 SPAG8-201ENST00000340291 1759 ntAPPRIS P3 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC8.79□□□□□ -1
LINC00643Q86TS7 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC8.79□□□□□ -1
LINC00643Q86TS7 SHMT2-205ENST00000553474 1765 ntTSL 2 BASIC8.79□□□□□ -1
LINC00643Q86TS7 SYBU-222ENST00000529175 2717 ntTSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 NRP1-201ENST00000265371 5882 ntAPPRIS P1 TSL 5 BASIC8.79□□□□□ -1
LINC00643Q86TS7 CNBD2-204ENST00000489667 2531 ntTSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 NEFM-204ENST00000518131 2500 ntAPPRIS ALT2 TSL 2 BASIC8.79□□□□□ -1
LINC00643Q86TS7 CACNA1C-205ENST00000399591 6535 ntAPPRIS ALT2 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 CACNA1C-206ENST00000399595 6535 ntAPPRIS ALT2 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 EPHB6-201ENST00000411471 3367 ntTSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 FAM47DP-201ENST00000402340 3290 ntBASIC8.79□□□□□ -1
LINC00643Q86TS7 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC8.79□□□□□ -1
LINC00643Q86TS7 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 CCS-201ENST00000310190 942 ntTSL 5 BASIC8.79□□□□□ -1
LINC00643Q86TS7 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 RCHY1-201ENST00000324439 4686 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC8.79□□□□□ -1
LINC00643Q86TS7 GAS7-202ENST00000396115 929 ntTSL 5 BASIC8.79□□□□□ -1
LINC00643Q86TS7 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 AL359075.1-203ENST00000462729 1002 ntBASIC8.79□□□□□ -1
LINC00643Q86TS7 AC026366.1-201ENST00000488803 879 ntBASIC8.79□□□□□ -1
LINC00643Q86TS7 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC8.79□□□□□ -1
LINC00643Q86TS7 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC8.79□□□□□ -1
LINC00643Q86TS7 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC8.79□□□□□ -1
LINC00643Q86TS7 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC8.79□□□□□ -1
LINC00643Q86TS7 GPX4-207ENST00000589115 812 ntTSL 2 BASIC8.79□□□□□ -1
LINC00643Q86TS7 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 AC064862.7-201ENST00000604520 867 ntBASIC8.79□□□□□ -1
LINC00643Q86TS7 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC8.79□□□□□ -1
LINC00643Q86TS7 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC8.79□□□□□ -1
LINC00643Q86TS7 ARHGEF9-235ENST00000637723 2146 ntTSL 5 BASIC8.79□□□□□ -1
LINC00643Q86TS7 RNF13-201ENST00000344229 2866 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 ATG7-213ENST00000446450 2042 ntTSL 2 BASIC8.79□□□□□ -1
LINC00643Q86TS7 AK4-201ENST00000327299 6836 ntAPPRIS P1 TSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 MATN2-218ENST00000524308 3449 ntTSL 1 (best) BASIC8.79□□□□□ -1
LINC00643Q86TS7 NEK6-212ENST00000539416 2582 ntTSL 2 BASIC8.79□□□□□ -1
LINC00643Q86TS7 PCDHGB4-202ENST00000615384 4725 ntAPPRIS P1 BASIC8.79□□□□□ -1
LINC00643Q86TS7 CDRT4-204ENST00000619038 2498 ntAPPRIS P2 TSL 1 (best) BASIC8.79□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms