Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 AC093813.1-201ENST00000605066 256 ntBASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 AC107373.2-201ENST00000607735 490 ntBASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 AC008687.7-202ENST00000637404 953 ntBASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 ARPIN-201ENST00000357484 7591 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 PSMD9-207ENST00000541212 2784 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 KRT8P35-201ENST00000483942 1338 ntBASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 PPP1R12A-201ENST00000261207 5582 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 SLC4A1-201ENST00000262418 4965 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 CCDC88C-204ENST00000389857 7474 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 DPYSL4-201ENST00000338492 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 AC020910.6-201ENST00000623084 1459 ntBASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 STOX2-201ENST00000308497 10458 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 CACNA1G-222ENST00000510366 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 CACNA1G-227ENST00000513964 6735 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 GATAD2A-203ENST00000404158 5776 ntAPPRIS ALT1 TSL 2 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 SLC24A4-204ENST00000531433 4531 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 USO1-201ENST00000264904 4135 ntTSL 2 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 RTL10-202ENST00000405640 6785 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 HNRNPA1P13-201ENST00000510646 963 ntBASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 CAPN5-201ENST00000278559 4397 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 ADK-205ENST00000539909 1866 ntTSL 2 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 WARS-203ENST00000358655 2466 ntTSL 2 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 GRIN1-202ENST00000371546 4114 ntTSL 5 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 TLR6-202ENST00000436693 5880 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 MPP2-219ENST00000612133 4938 ntTSL 5 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 SMAD2-203ENST00000402690 12075 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 MYADML-201ENST00000474610 2147 ntBASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 AL357143.1-202ENST00000640531 5777 ntTSL 5 BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 AC011840.2-201ENST00000563063 1520 ntBASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
PDLIM3Q53GG5 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
PDLIM3Q53GG5 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC12□□□□□ -0.49
PDLIM3Q53GG5 ABCA3-202ENST00000382381 6446 ntTSL 1 (best) BASIC12□□□□□ -0.49
PDLIM3Q53GG5 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC12□□□□□ -0.49
PDLIM3Q53GG5 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC12□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms