Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC16.12■□□□□ 0.17
TPM4P67936 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TPM4P67936 TMEM168-201ENST00000312814 7470 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TPM4P67936 MANBA-202ENST00000505239 2577 ntTSL 2 BASIC16.12■□□□□ 0.17
TPM4P67936 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
TPM4P67936 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC16.12■□□□□ 0.17
TPM4P67936 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
TPM4P67936 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
TPM4P67936 TMEM121B-202ENST00000399875 3961 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
TPM4P67936 AL357143.1-202ENST00000640531 5777 ntTSL 5 BASIC16.11■□□□□ 0.17
TPM4P67936 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
TPM4P67936 KIF3A-201ENST00000378735 3266 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 SEC23A-201ENST00000307712 4135 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 RHD-209ENST00000568195 1467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
TPM4P67936 CCDC126-202ENST00000409765 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC16.11■□□□□ 0.17
TPM4P67936 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC16.11■□□□□ 0.17
TPM4P67936 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
TPM4P67936 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 RBM47-201ENST00000295971 4056 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
TPM4P67936 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC16.11■□□□□ 0.17
TPM4P67936 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC16.11■□□□□ 0.17
TPM4P67936 OR52A1-202ENST00000380367 9783 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
TPM4P67936 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
TPM4P67936 POM121L8P-201ENST00000417732 1281 ntBASIC16.11■□□□□ 0.17
TPM4P67936 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC16.11■□□□□ 0.17
TPM4P67936 POM121L9P-203ENST00000441984 1285 ntBASIC16.11■□□□□ 0.17
TPM4P67936 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC16.11■□□□□ 0.17
TPM4P67936 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.11■□□□□ 0.17
TPM4P67936 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC16.11■□□□□ 0.17
TPM4P67936 AC009486.1-201ENST00000569860 813 ntBASIC16.11■□□□□ 0.17
TPM4P67936 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC16.11■□□□□ 0.17
TPM4P67936 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC16.11■□□□□ 0.17
TPM4P67936 AC002472.3-201ENST00000640124 621 ntBASIC16.11■□□□□ 0.17
TPM4P67936 USO1-201ENST00000264904 4135 ntTSL 2 BASIC16.11■□□□□ 0.17
TPM4P67936 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 ABR-202ENST00000302538 5289 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
TPM4P67936 DGCR2-201ENST00000263196 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 DGCR2-206ENST00000545799 4484 ntTSL 5 BASIC16.11■□□□□ 0.17
TPM4P67936 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC16.11■□□□□ 0.17
TPM4P67936 AL445209.1-201ENST00000607269 3491 ntBASIC16.11■□□□□ 0.17
TPM4P67936 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC16.11■□□□□ 0.17
TPM4P67936 OSBP2-219ENST00000535268 3248 ntTSL 2 BASIC16.11■□□□□ 0.17
TPM4P67936 ST8SIA1-203ENST00000396037 9714 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
TPM4P67936 KCNMA1-210ENST00000404771 4014 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
TPM4P67936 PABPC1-208ENST00000519004 2401 ntTSL 2 BASIC16.1■□□□□ 0.17
TPM4P67936 AC010336.1-201ENST00000539278 4739 ntBASIC16.1■□□□□ 0.17
TPM4P67936 GFAP-201ENST00000253408 3135 ntTSL 5 BASIC16.1■□□□□ 0.17
TPM4P67936 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TPM4P67936 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TPM4P67936 AL928654.5-201ENST00000624831 2501 ntBASIC16.1■□□□□ 0.17
TPM4P67936 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC16.1■□□□□ 0.17
TPM4P67936 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
TPM4P67936 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
TPM4P67936 MNT-201ENST00000174618 4996 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TPM4P67936 CIC-204ENST00000572681 8218 ntTSL 5 BASIC16.1■□□□□ 0.17
TPM4P67936 ANKRD52-201ENST00000267116 8688 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TPM4P67936 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TPM4P67936 GREB1-206ENST00000396123 5296 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TPM4P67936 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TPM4P67936 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC16.1■□□□□ 0.17
TPM4P67936 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TPM4P67936 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TPM4P67936 BASP1P1-201ENST00000430708 665 ntBASIC16.1■□□□□ 0.17
TPM4P67936 PTPA-215ENST00000432124 567 ntTSL 4 BASIC16.1■□□□□ 0.17
TPM4P67936 AL162726.2-201ENST00000438986 1017 ntBASIC16.1■□□□□ 0.17
TPM4P67936 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TPM4P67936 AC022137.2-201ENST00000503482 481 ntBASIC16.1■□□□□ 0.17
TPM4P67936 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC16.1■□□□□ 0.17
TPM4P67936 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TPM4P67936 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
TPM4P67936 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC16.1■□□□□ 0.17
TPM4P67936 FAM122B-203ENST00000370790 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
TPM4P67936 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TPM4P67936 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TPM4P67936 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
TPM4P67936 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TPM4P67936 KIF21B-202ENST00000360529 5389 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
TPM4P67936 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
TPM4P67936 AP000593.2-201ENST00000542775 1433 ntBASIC16.1■□□□□ 0.17
TPM4P67936 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
TPM4P67936 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC16.1■□□□□ 0.17
TPM4P67936 MKRN5P-201ENST00000445263 1467 ntBASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms