Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 TMBIM7P-202ENST00000641474 1516 ntBASIC12.64□□□□□ -0.39
CX3CR1P49238 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC12.64□□□□□ -0.39
CX3CR1P49238 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC12.64□□□□□ -0.39
CX3CR1P49238 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC12.64□□□□□ -0.39
CX3CR1P49238 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC12.64□□□□□ -0.39
CX3CR1P49238 HIST2H2BF-201ENST00000369167 1954 ntAPPRIS P1 BASIC12.64□□□□□ -0.39
CX3CR1P49238 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC12.64□□□□□ -0.39
CX3CR1P49238 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC12.64□□□□□ -0.39
CX3CR1P49238 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC12.64□□□□□ -0.39
CX3CR1P49238 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 GZMB-202ENST00000382540 816 ntTSL 5 BASIC12.64□□□□□ -0.39
CX3CR1P49238 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC12.64□□□□□ -0.39
CX3CR1P49238 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC12.64□□□□□ -0.39
CX3CR1P49238 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC12.64□□□□□ -0.39
CX3CR1P49238 AC234783.1-201ENST00000441761 496 ntBASIC12.64□□□□□ -0.39
CX3CR1P49238 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC12.64□□□□□ -0.39
CX3CR1P49238 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC12.64□□□□□ -0.39
CX3CR1P49238 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC12.64□□□□□ -0.39
CX3CR1P49238 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC12.64□□□□□ -0.39
CX3CR1P49238 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 AC023310.1-201ENST00000554836 735 ntBASIC12.64□□□□□ -0.39
CX3CR1P49238 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 DUX4L46-201ENST00000566845 751 ntBASIC12.64□□□□□ -0.39
CX3CR1P49238 APOC4-201ENST00000591600 348 ntTSL 3 BASIC12.64□□□□□ -0.39
CX3CR1P49238 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC12.64□□□□□ -0.39
CX3CR1P49238 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC12.64□□□□□ -0.39
CX3CR1P49238 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 AGAP10P-201ENST00000454844 2418 ntBASIC12.64□□□□□ -0.39
CX3CR1P49238 FAS-202ENST00000352159 1722 ntTSL 5 BASIC12.64□□□□□ -0.39
CX3CR1P49238 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 MTUS1-204ENST00000381869 6256 ntTSL 5 BASIC12.64□□□□□ -0.39
CX3CR1P49238 TMEM245-201ENST00000374586 7980 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC12.64□□□□□ -0.39
CX3CR1P49238 NCBP2-204ENST00000427641 1946 ntTSL 2 BASIC12.64□□□□□ -0.39
CX3CR1P49238 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC12.64□□□□□ -0.39
CX3CR1P49238 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 SPTBN2-204ENST00000529997 8085 ntTSL 5 BASIC12.64□□□□□ -0.39
CX3CR1P49238 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC12.64□□□□□ -0.39
CX3CR1P49238 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
CX3CR1P49238 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CR1P49238 AL008718.2-201ENST00000609206 1313 ntBASIC12.63□□□□□ -0.39
CX3CR1P49238 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC12.63□□□□□ -0.39
CX3CR1P49238 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
CX3CR1P49238 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
CX3CR1P49238 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CR1P49238 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CR1P49238 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC12.63□□□□□ -0.39
CX3CR1P49238 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CR1P49238 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
CX3CR1P49238 FAM156A-221ENST00000622447 3757 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CR1P49238 CETP-203ENST00000566128 1733 ntTSL 5 BASIC12.63□□□□□ -0.39
CX3CR1P49238 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CR1P49238 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CR1P49238 ARHGEF33-202ENST00000409978 4484 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
CX3CR1P49238 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
CX3CR1P49238 MXI1-205ENST00000393134 889 ntTSL 2 BASIC12.63□□□□□ -0.39
CX3CR1P49238 BOLA2P3-201ENST00000404566 256 ntBASIC12.63□□□□□ -0.39
CX3CR1P49238 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC12.63□□□□□ -0.39
CX3CR1P49238 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC12.63□□□□□ -0.39
CX3CR1P49238 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC12.63□□□□□ -0.39
CX3CR1P49238 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC12.63□□□□□ -0.39
CX3CR1P49238 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC12.63□□□□□ -0.39
CX3CR1P49238 KLF2P4-201ENST00000451959 1225 ntBASIC12.63□□□□□ -0.39
CX3CR1P49238 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC12.63□□□□□ -0.39
CX3CR1P49238 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC12.63□□□□□ -0.39
CX3CR1P49238 AC079316.1-201ENST00000548397 411 ntBASIC12.63□□□□□ -0.39
CX3CR1P49238 RBM8B-201ENST00000555532 525 ntBASIC12.63□□□□□ -0.39
CX3CR1P49238 MIR6720-201ENST00000611664 98 ntBASIC12.63□□□□□ -0.39
CX3CR1P49238 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CR1P49238 AC105233.6-201ENST00000642093 218 ntBASIC12.63□□□□□ -0.39
CX3CR1P49238 NFATC2-202ENST00000396009 7437 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CR1P49238 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC12.63□□□□□ -0.39
CX3CR1P49238 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CR1P49238 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CR1P49238 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CR1P49238 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CR1P49238 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CR1P49238 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
CX3CR1P49238 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
CX3CR1P49238 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC12.63□□□□□ -0.39
CX3CR1P49238 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
CX3CR1P49238 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC12.63□□□□□ -0.39
CX3CR1P49238 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC12.63□□□□□ -0.39
CX3CR1P49238 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CX3CR1P49238 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
CX3CR1P49238 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC12.62□□□□□ -0.39
CX3CR1P49238 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CX3CR1P49238 ITPR2-202ENST00000381340 11405 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
CX3CR1P49238 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms