Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
BRCA1P38398 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC16.62■□□□□ 0.25
BRCA1P38398 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
BRCA1P38398 HSPA7-201ENST00000445535 1927 ntBASIC16.62■□□□□ 0.25
BRCA1P38398 MIR766-201ENST00000390223 111 ntBASIC16.62■□□□□ 0.25
BRCA1P38398 CNBP-202ENST00000441626 1040 ntTSL 2 BASIC16.62■□□□□ 0.25
BRCA1P38398 CST7-201ENST00000480798 930 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
BRCA1P38398 AC007622.1-201ENST00000488371 535 ntBASIC16.62■□□□□ 0.25
BRCA1P38398 SPG20-AS1-203ENST00000493739 566 ntTSL 3 BASIC16.62■□□□□ 0.25
BRCA1P38398 ROPN1L-AS1-201ENST00000513037 189 ntTSL 2 BASIC16.62■□□□□ 0.25
BRCA1P38398 AC009093.2-201ENST00000563477 546 ntTSL 4 BASIC16.62■□□□□ 0.25
BRCA1P38398 CADM1-221ENST00000612235 1042 ntTSL 5 BASIC16.62■□□□□ 0.25
BRCA1P38398 AL139260.3-204ENST00000621281 609 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
BRCA1P38398 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
BRCA1P38398 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
BRCA1P38398 SUCLG2-204ENST00000493112 1516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
BRCA1P38398 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
BRCA1P38398 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
BRCA1P38398 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
BRCA1P38398 ZFHX4-AS1-201ENST00000518143 1711 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
BRCA1P38398 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
BRCA1P38398 EPM2A-218ENST00000639465 2203 ntTSL 5 BASIC16.62■□□□□ 0.25
BRCA1P38398 RAB8A-202ENST00000586682 1315 ntTSL 2 BASIC16.61■□□□□ 0.25
BRCA1P38398 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
BRCA1P38398 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.61■□□□□ 0.25
BRCA1P38398 AC007950.2-201ENST00000615045 2347 ntBASIC16.61■□□□□ 0.25
BRCA1P38398 PLA2G2A-201ENST00000375111 970 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCA1P38398 POLR3DP1-201ENST00000398689 1176 ntBASIC16.61■□□□□ 0.25
BRCA1P38398 AL358876.2-201ENST00000424689 477 ntTSL 3 BASIC16.61■□□□□ 0.25
BRCA1P38398 DIS3L2P1-201ENST00000509197 559 ntBASIC16.61■□□□□ 0.25
BRCA1P38398 IL32-230ENST00000551122 733 ntAPPRIS ALT2 TSL 3 BASIC16.61■□□□□ 0.25
BRCA1P38398 RAB42P1-201ENST00000555078 316 ntBASIC16.61■□□□□ 0.25
BRCA1P38398 AC027279.2-201ENST00000561938 793 ntTSL 5 BASIC16.61■□□□□ 0.25
BRCA1P38398 AC090616.6-202ENST00000583601 1088 ntBASIC16.61■□□□□ 0.25
BRCA1P38398 MDC1-209ENST00000613547 830 ntTSL 5 BASIC16.61■□□□□ 0.25
BRCA1P38398 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.61■□□□□ 0.25
BRCA1P38398 KRT26-201ENST00000335552 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCA1P38398 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCA1P38398 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCA1P38398 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BRCA1P38398 MTHFR-210ENST00000641407 2387 ntBASIC16.61■□□□□ 0.25
BRCA1P38398 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCA1P38398 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC16.61■□□□□ 0.25
BRCA1P38398 SAP18-208ENST00000621421 2300 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCA1P38398 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCA1P38398 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BRCA1P38398 TRIML2-207ENST00000512729 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCA1P38398 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCA1P38398 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC16.61■□□□□ 0.25
BRCA1P38398 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCA1P38398 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCA1P38398 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.61■□□□□ 0.25
BRCA1P38398 ATP6V0D1-218ENST00000602876 1554 ntTSL 5 BASIC16.61■□□□□ 0.25
BRCA1P38398 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCA1P38398 HAO1-201ENST00000378789 1777 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCA1P38398 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCA1P38398 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
BRCA1P38398 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCA1P38398 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
BRCA1P38398 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BRCA1P38398 AC245140.2-201ENST00000624054 1939 ntBASIC16.61■□□□□ 0.25
BRCA1P38398 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BRCA1P38398 BNIP1-202ENST00000351486 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCA1P38398 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
BRCA1P38398 ASPDH-201ENST00000376916 848 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BRCA1P38398 CACYBPP3-201ENST00000406011 625 ntBASIC16.61■□□□□ 0.25
BRCA1P38398 HNRNPA1P68-201ENST00000425806 979 ntBASIC16.61■□□□□ 0.25
BRCA1P38398 FTLP3-201ENST00000427242 528 ntBASIC16.61■□□□□ 0.25
BRCA1P38398 AP001092.1-201ENST00000433606 469 ntTSL 3 BASIC16.61■□□□□ 0.25
BRCA1P38398 RN7SL477P-201ENST00000488440 286 ntBASIC16.61■□□□□ 0.25
BRCA1P38398 ZFYVE1-206ENST00000555072 1225 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BRCA1P38398 AC032044.1-201ENST00000570924 570 ntTSL 4 BASIC16.61■□□□□ 0.25
BRCA1P38398 HNRNPA1P11-201ENST00000580106 956 ntBASIC16.61■□□□□ 0.25
BRCA1P38398 FDPS-220ENST00000611010 1196 ntTSL 5 BASIC16.61■□□□□ 0.25
BRCA1P38398 AC010601.2-201ENST00000623060 774 ntBASIC16.61■□□□□ 0.25
BRCA1P38398 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BRCA1P38398 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BRCA1P38398 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BRCA1P38398 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BRCA1P38398 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
BRCA1P38398 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BRCA1P38398 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.6■□□□□ 0.25
BRCA1P38398 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BRCA1P38398 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BRCA1P38398 GAPDH-205ENST00000396861 1348 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
BRCA1P38398 HSPA8P5-201ENST00000456928 2069 ntBASIC16.6■□□□□ 0.25
BRCA1P38398 AL359878.1-201ENST00000381466 1886 ntTSL 2 BASIC16.6■□□□□ 0.25
BRCA1P38398 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
BRCA1P38398 PIGB-202ENST00000539642 1668 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
BRCA1P38398 AC011239.2-201ENST00000624820 1489 ntBASIC16.6■□□□□ 0.25
BRCA1P38398 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BRCA1P38398 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
BRCA1P38398 PKIG-201ENST00000349959 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BRCA1P38398 AC053503.4-201ENST00000431827 224 ntTSL 5 BASIC16.6■□□□□ 0.25
BRCA1P38398 AL137077.1-201ENST00000442115 528 ntBASIC16.6■□□□□ 0.25
BRCA1P38398 AC008267.3-201ENST00000448776 712 ntBASIC16.6■□□□□ 0.25
BRCA1P38398 AC090200.1-201ENST00000522918 590 ntTSL 2 BASIC16.6■□□□□ 0.25
BRCA1P38398 HAX1-211ENST00000532105 771 ntTSL 3 BASIC16.6■□□□□ 0.25
BRCA1P38398 CCDC42-202ENST00000539522 1087 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BRCA1P38398 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms