Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL9A1P20849 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.61□□□□□ -0.07
COL9A1P20849 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
COL9A1P20849 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
COL9A1P20849 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
COL9A1P20849 TTC23L-203ENST00000505624 1353 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
COL9A1P20849 LINC00905-203ENST00000588838 1414 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
COL9A1P20849 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC14.6□□□□□ -0.07
COL9A1P20849 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 WFDC3-201ENST00000243938 1000 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 PYY2-201ENST00000315776 282 ntBASIC14.6□□□□□ -0.07
COL9A1P20849 MRPL48-203ENST00000398483 1058 ntTSL 3 BASIC14.6□□□□□ -0.07
COL9A1P20849 RN7SKP212-201ENST00000410851 328 ntBASIC14.6□□□□□ -0.07
COL9A1P20849 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC14.6□□□□□ -0.07
COL9A1P20849 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC14.6□□□□□ -0.07
COL9A1P20849 PRRX2-AS1-201ENST00000440413 429 ntTSL 2 BASIC14.6□□□□□ -0.07
COL9A1P20849 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC14.6□□□□□ -0.07
COL9A1P20849 RPL30-213ENST00000523172 274 ntTSL 5 BASIC14.6□□□□□ -0.07
COL9A1P20849 AL049829.2-201ENST00000554010 285 ntTSL 3 BASIC14.6□□□□□ -0.07
COL9A1P20849 AL139317.2-201ENST00000556998 158 ntBASIC14.6□□□□□ -0.07
COL9A1P20849 AC009120.2-205ENST00000561921 490 ntTSL 3 BASIC14.6□□□□□ -0.07
COL9A1P20849 CDC37P2-201ENST00000562287 1029 ntBASIC14.6□□□□□ -0.07
COL9A1P20849 AC007610.2-201ENST00000566770 666 ntTSL 3 BASIC14.6□□□□□ -0.07
COL9A1P20849 AC091691.1-201ENST00000583587 1018 ntBASIC14.6□□□□□ -0.07
COL9A1P20849 SIGLEC22P-201ENST00000599104 714 ntBASIC14.6□□□□□ -0.07
COL9A1P20849 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC14.6□□□□□ -0.07
COL9A1P20849 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC14.6□□□□□ -0.07
COL9A1P20849 MED25-209ENST00000612791 881 ntTSL 5 BASIC14.6□□□□□ -0.07
COL9A1P20849 TCEAL4-213ENST00000613326 1166 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
COL9A1P20849 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC14.6□□□□□ -0.07
COL9A1P20849 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC14.6□□□□□ -0.07
COL9A1P20849 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC14.6□□□□□ -0.07
COL9A1P20849 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.6□□□□□ -0.07
COL9A1P20849 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.6□□□□□ -0.07
COL9A1P20849 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
COL9A1P20849 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC14.6□□□□□ -0.07
COL9A1P20849 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC14.6□□□□□ -0.07
COL9A1P20849 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.6□□□□□ -0.07
COL9A1P20849 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
COL9A1P20849 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC14.6□□□□□ -0.07
COL9A1P20849 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL9A1P20849 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC14.59□□□□□ -0.07
COL9A1P20849 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL9A1P20849 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL9A1P20849 CT55-201ENST00000276241 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL9A1P20849 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
COL9A1P20849 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
COL9A1P20849 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
COL9A1P20849 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL9A1P20849 JTB-202ENST00000356648 1040 ntTSL 2 BASIC14.59□□□□□ -0.07
COL9A1P20849 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC14.59□□□□□ -0.07
COL9A1P20849 CASK-202ENST00000378158 3848 ntTSL 5 BASIC14.59□□□□□ -0.07
COL9A1P20849 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
COL9A1P20849 KRTAP10-12-201ENST00000400365 873 ntAPPRIS P2 BASIC14.59□□□□□ -0.07
COL9A1P20849 U3.41-201ENST00000408711 219 ntBASIC14.59□□□□□ -0.07
COL9A1P20849 AC073869.2-201ENST00000417338 1026 ntBASIC14.59□□□□□ -0.07
COL9A1P20849 RLN3-201ENST00000431365 580 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL9A1P20849 LINC02344-201ENST00000443576 644 ntTSL 2 BASIC14.59□□□□□ -0.07
COL9A1P20849 AC007405.2-203ENST00000455988 547 ntTSL 4 BASIC14.59□□□□□ -0.07
COL9A1P20849 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC14.59□□□□□ -0.07
COL9A1P20849 AC117834.1-201ENST00000523197 602 ntTSL 4 BASIC14.59□□□□□ -0.07
COL9A1P20849 DDIAS-204ENST00000525388 961 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
COL9A1P20849 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
COL9A1P20849 METTL7AP1-201ENST00000547343 496 ntBASIC14.59□□□□□ -0.07
COL9A1P20849 RN7SL480P-201ENST00000581481 294 ntBASIC14.59□□□□□ -0.07
COL9A1P20849 PPY-202ENST00000587006 431 ntTSL 3 BASIC14.59□□□□□ -0.07
COL9A1P20849 Metazoa_SRP.64-201ENST00000611904 268 ntBASIC14.59□□□□□ -0.07
COL9A1P20849 ZFAS1-208ENST00000618800 597 ntTSL 3 BASIC14.59□□□□□ -0.07
COL9A1P20849 AC002044.3-201ENST00000623314 541 ntBASIC14.59□□□□□ -0.07
COL9A1P20849 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
COL9A1P20849 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
COL9A1P20849 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
COL9A1P20849 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
COL9A1P20849 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC14.59□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms