Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
UPF3BQ9BZI7 ELK2AP-201ENST00000392510 1007 ntBASIC17.13■□□□□ 0.33
UPF3BQ9BZI7 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
UPF3BQ9BZI7 BNIP3P42-201ENST00000454982 569 ntBASIC17.13■□□□□ 0.33
UPF3BQ9BZI7 RBM8B-201ENST00000555532 525 ntBASIC17.13■□□□□ 0.33
UPF3BQ9BZI7 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC17.13■□□□□ 0.33
UPF3BQ9BZI7 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC17.13■□□□□ 0.33
UPF3BQ9BZI7 BNIP3P29-201ENST00000598302 571 ntBASIC17.13■□□□□ 0.33
UPF3BQ9BZI7 AC011447.5-201ENST00000616168 564 ntBASIC17.13■□□□□ 0.33
UPF3BQ9BZI7 LINC01114-203ENST00000425879 2434 ntTSL 2 BASIC17.13■□□□□ 0.33
UPF3BQ9BZI7 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC17.13■□□□□ 0.33
UPF3BQ9BZI7 AC073548.1-201ENST00000624088 1882 ntBASIC17.13■□□□□ 0.33
UPF3BQ9BZI7 AMT-239ENST00000636865 1914 ntTSL 5 BASIC17.13■□□□□ 0.33
UPF3BQ9BZI7 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
UPF3BQ9BZI7 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
UPF3BQ9BZI7 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
UPF3BQ9BZI7 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
UPF3BQ9BZI7 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC17.13■□□□□ 0.33
UPF3BQ9BZI7 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
UPF3BQ9BZI7 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
UPF3BQ9BZI7 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
UPF3BQ9BZI7 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
UPF3BQ9BZI7 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
UPF3BQ9BZI7 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 RNF14-201ENST00000347642 4213 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 STK25-235ENST00000543554 2556 ntTSL 2 BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 GOLGA8EP-201ENST00000530246 1959 ntBASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 ANAPC11-202ENST00000357385 881 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 AC023310.1-201ENST00000554836 735 ntBASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 AGAP12P-201ENST00000585227 2359 ntBASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 SPHK2-201ENST00000245222 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
UPF3BQ9BZI7 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 AC005562.1-201ENST00000583030 3219 ntBASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 CHFR-205ENST00000450056 3250 ntTSL 2 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 ENO2-201ENST00000229277 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 PSAP-202ENST00000394936 2872 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 PAK6-202ENST00000455577 4215 ntTSL 2 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 CYP4F23P-201ENST00000593402 1579 ntBASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 MEX3B-202ENST00000558133 4333 ntBASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 C19orf66-202ENST00000397881 2140 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 GOLGA8IP-202ENST00000611635 2100 ntBASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 PCMTD1-201ENST00000360540 4252 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 OLR1-203ENST00000432556 950 ntTSL 2 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 AC005962.1-201ENST00000584100 773 ntBASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
UPF3BQ9BZI7 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms