Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC16.31■□□□□ 0.2
ERCC4Q92889 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.31■□□□□ 0.2
ERCC4Q92889 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC16.31■□□□□ 0.2
ERCC4Q92889 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC4Q92889 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC4Q92889 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC4Q92889 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC4Q92889 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC4Q92889 ZSCAN16-AS1-201ENST00000600652 2163 ntTSL 2 BASIC16.31■□□□□ 0.2
ERCC4Q92889 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC4Q92889 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC4Q92889 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
ERCC4Q92889 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC4Q92889 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC4Q92889 HPS1-215ENST00000613394 3714 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
ERCC4Q92889 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC4Q92889 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC4Q92889 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
ERCC4Q92889 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
ERCC4Q92889 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC16.3■□□□□ 0.2
ERCC4Q92889 ANKRD30BP2-201ENST00000435744 1610 ntBASIC16.3■□□□□ 0.2
ERCC4Q92889 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ERCC4Q92889 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
ERCC4Q92889 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
ERCC4Q92889 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ERCC4Q92889 GALC-201ENST00000261304 3883 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ERCC4Q92889 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
ERCC4Q92889 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
ERCC4Q92889 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ERCC4Q92889 SPPL2B-209ENST00000613503 3456 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
ERCC4Q92889 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
ERCC4Q92889 FAM224A-201ENST00000419557 2031 ntTSL 2 BASIC16.3■□□□□ 0.2
ERCC4Q92889 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
ERCC4Q92889 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC16.3■□□□□ 0.2
ERCC4Q92889 GUK1-206ENST00000366723 845 ntTSL 5 BASIC16.3■□□□□ 0.2
ERCC4Q92889 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ERCC4Q92889 AP006294.1-201ENST00000415407 339 ntBASIC16.3■□□□□ 0.2
ERCC4Q92889 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC16.3■□□□□ 0.2
ERCC4Q92889 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC16.3■□□□□ 0.2
ERCC4Q92889 AL355864.2-201ENST00000447420 863 ntBASIC16.3■□□□□ 0.2
ERCC4Q92889 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
ERCC4Q92889 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC16.3■□□□□ 0.2
ERCC4Q92889 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ERCC4Q92889 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC16.3■□□□□ 0.2
ERCC4Q92889 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC16.3■□□□□ 0.2
ERCC4Q92889 RNA5SP486-201ENST00000515961 83 ntBASIC16.3■□□□□ 0.2
ERCC4Q92889 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC16.3■□□□□ 0.2
ERCC4Q92889 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC16.3■□□□□ 0.2
ERCC4Q92889 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC16.3■□□□□ 0.2
ERCC4Q92889 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC16.3■□□□□ 0.2
ERCC4Q92889 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ERCC4Q92889 AC132938.4-201ENST00000623835 848 ntBASIC16.3■□□□□ 0.2
ERCC4Q92889 ZNF821-214ENST00000565601 1858 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
ERCC4Q92889 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC16.3■□□□□ 0.2
ERCC4Q92889 AL356585.2-201ENST00000625078 2396 ntBASIC16.3■□□□□ 0.2
ERCC4Q92889 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC16.3■□□□□ 0.2
ERCC4Q92889 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ERCC4Q92889 AC114271.1-201ENST00000612689 2813 ntBASIC16.3■□□□□ 0.2
ERCC4Q92889 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
ERCC4Q92889 MYO1G-201ENST00000258787 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ERCC4Q92889 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ERCC4Q92889 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ERCC4Q92889 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ERCC4Q92889 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
ERCC4Q92889 LMAN2L-202ENST00000377079 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
ERCC4Q92889 KRT8P4-201ENST00000509735 1454 ntBASIC16.29■□□□□ 0.2
ERCC4Q92889 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ERCC4Q92889 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ERCC4Q92889 CACNA1C-231ENST00000616390 2833 ntTSL 2 BASIC16.29■□□□□ 0.2
ERCC4Q92889 COL4A1-201ENST00000375820 6532 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ERCC4Q92889 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ERCC4Q92889 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
ERCC4Q92889 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ERCC4Q92889 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC16.29■□□□□ 0.2
ERCC4Q92889 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ERCC4Q92889 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
ERCC4Q92889 SLC5A5-201ENST00000222248 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ERCC4Q92889 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ERCC4Q92889 TFEB-205ENST00000394283 2595 ntTSL 2 BASIC16.29■□□□□ 0.2
ERCC4Q92889 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
ERCC4Q92889 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC16.29■□□□□ 0.2
ERCC4Q92889 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC16.29■□□□□ 0.2
ERCC4Q92889 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC16.29■□□□□ 0.2
ERCC4Q92889 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC16.29■□□□□ 0.2
ERCC4Q92889 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC16.29■□□□□ 0.2
ERCC4Q92889 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC16.29■□□□□ 0.2
ERCC4Q92889 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC16.29■□□□□ 0.2
ERCC4Q92889 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
ERCC4Q92889 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
ERCC4Q92889 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC16.29■□□□□ 0.2
ERCC4Q92889 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
ERCC4Q92889 AC005586.2-201ENST00000563946 837 ntBASIC16.29■□□□□ 0.2
ERCC4Q92889 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC16.29■□□□□ 0.2
ERCC4Q92889 AC008735.3-201ENST00000596646 500 ntBASIC16.29■□□□□ 0.2
ERCC4Q92889 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC16.29■□□□□ 0.2
ERCC4Q92889 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC16.29■□□□□ 0.2
ERCC4Q92889 AC104506.1-201ENST00000609247 429 ntBASIC16.29■□□□□ 0.2
ERCC4Q92889 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC16.29■□□□□ 0.2
ERCC4Q92889 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
ERCC4Q92889 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms