Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 CASP8-202ENST00000264275 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 GOLGA8IP-202ENST00000611635 2100 ntBASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 AMT-256ENST00000638063 1783 ntTSL 5 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 AC103592.1-201ENST00000394513 664 ntBASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 AL391647.1-201ENST00000395664 511 ntBASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 AK2P2-201ENST00000439142 405 ntBASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 CTBP2P4-201ENST00000513884 920 ntBASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 AC005740.1-201ENST00000515639 522 ntBASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 ANO10-202ENST00000350459 2039 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 KRT8P31-201ENST00000504812 1408 ntBASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 LSS-211ENST00000522411 2523 ntTSL 2 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 NCR3-202ENST00000376071 541 ntTSL 5 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 PTPA-218ENST00000435132 618 ntTSL 2 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 RN7SL555P-201ENST00000584742 339 ntBASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 AL161773.1-201ENST00000624845 863 ntBASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC14.52□□□□□ -0.08
SHROOM3Q8TF72 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SHROOM3Q8TF72 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SHROOM3Q8TF72 KRT18P9-201ENST00000604826 1300 ntBASIC14.52□□□□□ -0.08
SHROOM3Q8TF72 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
SHROOM3Q8TF72 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
SHROOM3Q8TF72 PPARG-205ENST00000397010 2017 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SHROOM3Q8TF72 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
SHROOM3Q8TF72 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
SHROOM3Q8TF72 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.08
SHROOM3Q8TF72 SARS-202ENST00000369923 1882 ntTSL 5 BASIC14.52□□□□□ -0.08
SHROOM3Q8TF72 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 AC006987.1-201ENST00000413610 527 ntBASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 NUP210P1-202ENST00000504322 710 ntBASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 RN7SL774P-201ENST00000577467 290 ntBASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 RN7SL736P-201ENST00000613111 269 ntBASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 TUBBP5-203ENST00000508529 1334 ntBASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 AC006480.2-201ENST00000609770 1337 ntBASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 KIRREL2-203ENST00000360202 2942 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 TADA3-204ENST00000440161 1617 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 PCDHA3-202ENST00000532566 4594 ntBASIC14.52□□□□□ -0.09
SHROOM3Q8TF72 ZFP82-201ENST00000392161 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC14.51□□□□□ -0.09
SHROOM3Q8TF72 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms