Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 THSD7A-205ENST00000617773 10583 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 GPR61-204ENST00000527748 4921 ntAPPRIS P1 TSL 2 BASIC12.04□□□□□ -0.48
PDLIM3Q53GG5 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 CPLX2-201ENST00000359546 5023 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 KRT8P14-201ENST00000414254 1442 ntBASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 AMER3-202ENST00000423981 6172 ntAPPRIS P1 TSL 4 BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 TRPV1-206ENST00000571088 4105 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 ZW10-201ENST00000200135 2992 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 B9D1-203ENST00000395615 805 ntTSL 3 BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 HLA-DQB2-229ENST00000411527 1059 ntBASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 OLR1-203ENST00000432556 950 ntTSL 2 BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 AC004898.1-201ENST00000451057 766 ntBASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 IMP3P2-201ENST00000489760 475 ntBASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 LGALS3BP-202ENST00000585407 936 ntTSL 2 BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 RHOXF1P1-202ENST00000635473 501 ntBASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 MYNN-201ENST00000349841 4999 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 ADCY7-202ENST00000394697 6213 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 SLFNL1-AS1-201ENST00000626479 4800 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 BAHD1-203ENST00000561234 4698 ntAPPRIS ALT1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 API5-203ENST00000455725 2257 ntTSL 2 BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 NLRC3-202ENST00000359128 6401 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 IRF6-204ENST00000542854 4256 ntTSL 2 BASIC12.03□□□□□ -0.48
PDLIM3Q53GG5 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
PDLIM3Q53GG5 PTK2-202ENST00000395218 4415 ntTSL 5 BASIC12.02□□□□□ -0.48
PDLIM3Q53GG5 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.48
PDLIM3Q53GG5 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC12.02□□□□□ -0.48
PDLIM3Q53GG5 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC12.02□□□□□ -0.48
PDLIM3Q53GG5 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
PDLIM3Q53GG5 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
PDLIM3Q53GG5 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
PDLIM3Q53GG5 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
PDLIM3Q53GG5 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
PDLIM3Q53GG5 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 WTIP-202ENST00000590071 13665 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 TP73-213ENST00000604479 1623 ntTSL 5 BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 TPO-206ENST00000382269 1155 ntTSL 5 BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 TLE1P1-201ENST00000422965 589 ntBASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 AL442647.2-201ENST00000429864 857 ntBASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 AC016694.1-201ENST00000434179 700 ntBASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 Z93015.1-201ENST00000451718 390 ntBASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 FTH1P14-201ENST00000482930 551 ntBASIC12.02□□□□□ -0.49
PDLIM3Q53GG5 HIST2H2BC-201ENST00000498492 580 ntBASIC12.02□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms