Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC15.2■□□□□ 0.02
LIG3P49916 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC15.2■□□□□ 0.02
LIG3P49916 AL590640.2-201ENST00000457038 527 ntBASIC15.2■□□□□ 0.02
LIG3P49916 RNA5SP486-201ENST00000515961 83 ntBASIC15.2■□□□□ 0.02
LIG3P49916 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC15.2■□□□□ 0.02
LIG3P49916 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC15.2■□□□□ 0.02
LIG3P49916 AC078819.1-201ENST00000547454 765 ntBASIC15.2■□□□□ 0.02
LIG3P49916 AC012085.1-201ENST00000548270 765 ntBASIC15.2■□□□□ 0.02
LIG3P49916 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC15.2■□□□□ 0.02
LIG3P49916 RN7SL48P-201ENST00000579283 293 ntBASIC15.2■□□□□ 0.02
LIG3P49916 AC138951.2-201ENST00000623455 1161 ntBASIC15.2■□□□□ 0.02
LIG3P49916 KCTD9-201ENST00000221200 3401 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIG3P49916 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC15.2■□□□□ 0.02
LIG3P49916 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIG3P49916 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIG3P49916 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIG3P49916 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC15.2■□□□□ 0.02
LIG3P49916 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LIG3P49916 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIG3P49916 PES1-204ENST00000402284 2144 ntTSL 5 BASIC15.2■□□□□ 0.02
LIG3P49916 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC15.2■□□□□ 0.02
LIG3P49916 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
LIG3P49916 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIG3P49916 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC15.2■□□□□ 0.02
LIG3P49916 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIG3P49916 DCAF6-201ENST00000312263 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIG3P49916 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC15.2■□□□□ 0.02
LIG3P49916 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
LIG3P49916 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
LIG3P49916 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LIG3P49916 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
LIG3P49916 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.19■□□□□ 0.02
LIG3P49916 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC15.19■□□□□ 0.02
LIG3P49916 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC15.19■□□□□ 0.02
LIG3P49916 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC15.19■□□□□ 0.02
LIG3P49916 CROT-203ENST00000419147 2959 ntTSL 2 BASIC15.19■□□□□ 0.02
LIG3P49916 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC15.19■□□□□ 0.02
LIG3P49916 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC15.19■□□□□ 0.02
LIG3P49916 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
LIG3P49916 MDM1-201ENST00000303145 2918 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 JOSD1-201ENST00000216039 3648 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 KIAA1683-201ENST00000392413 4402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 TPM3P8-201ENST00000330554 643 ntBASIC15.19■□□□□ 0.02
LIG3P49916 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC15.19■□□□□ 0.02
LIG3P49916 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
LIG3P49916 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC15.19■□□□□ 0.02
LIG3P49916 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC15.19■□□□□ 0.02
LIG3P49916 TPT1P11-201ENST00000458482 498 ntBASIC15.19■□□□□ 0.02
LIG3P49916 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC15.19■□□□□ 0.02
LIG3P49916 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
LIG3P49916 AHRR-211ENST00000515206 462 ntTSL 5 BASIC15.19■□□□□ 0.02
LIG3P49916 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC15.19■□□□□ 0.02
LIG3P49916 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC15.19■□□□□ 0.02
LIG3P49916 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
LIG3P49916 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
LIG3P49916 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
LIG3P49916 AC079316.1-201ENST00000548397 411 ntBASIC15.19■□□□□ 0.02
LIG3P49916 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC15.19■□□□□ 0.02
LIG3P49916 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC15.19■□□□□ 0.02
LIG3P49916 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC15.19■□□□□ 0.02
LIG3P49916 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC15.19■□□□□ 0.02
LIG3P49916 TMUB2-201ENST00000319511 2418 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 SLC5A5-201ENST00000222248 3576 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 DLGAP3-201ENST00000235180 3587 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
LIG3P49916 CLOCK-211ENST00000513440 3580 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC15.19■□□□□ 0.02
LIG3P49916 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC15.19■□□□□ 0.02
LIG3P49916 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC15.19■□□□□ 0.02
LIG3P49916 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 STAB1-201ENST00000321725 7928 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 SOAT1-204ENST00000540564 6861 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
LIG3P49916 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC15.19■□□□□ 0.02
LIG3P49916 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 LGALS9-201ENST00000302228 3018 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 NR4A1-202ENST00000360284 2589 ntTSL 2 BASIC15.19■□□□□ 0.02
LIG3P49916 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
LIG3P49916 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
LIG3P49916 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC15.18■□□□□ 0.02
LIG3P49916 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
LIG3P49916 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms