Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
SOX2P48431 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC12.69□□□□□ -0.38
SOX2P48431 IGHG4-202ENST00000641978 2597 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
SOX2P48431 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
SOX2P48431 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC12.69□□□□□ -0.38
SOX2P48431 DGKE-201ENST00000284061 8660 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
SOX2P48431 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC12.69□□□□□ -0.38
SOX2P48431 COL6A2-203ENST00000397763 3101 ntTSL 5 BASIC12.68□□□□□ -0.38
SOX2P48431 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 PPP1R15B-201ENST00000367188 5227 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 TECPR1-204ENST00000447648 6564 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 CYB5A-202ENST00000340533 3283 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 MSTO2P-201ENST00000314835 1709 ntBASIC12.68□□□□□ -0.38
SOX2P48431 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC12.68□□□□□ -0.38
SOX2P48431 TP53INP2-202ENST00000374810 4184 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
SOX2P48431 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 CACNA1C-214ENST00000399634 7590 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
SOX2P48431 CACNA1C-222ENST00000406454 7590 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
SOX2P48431 RRM2B-211ENST00000621845 3483 ntTSL 2 BASIC12.68□□□□□ -0.38
SOX2P48431 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 USP17L6P-201ENST00000382470 1197 ntBASIC12.68□□□□□ -0.38
SOX2P48431 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC12.68□□□□□ -0.38
SOX2P48431 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC12.68□□□□□ -0.38
SOX2P48431 ARSEP1-201ENST00000420443 635 ntBASIC12.68□□□□□ -0.38
SOX2P48431 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC12.68□□□□□ -0.38
SOX2P48431 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC12.68□□□□□ -0.38
SOX2P48431 AL161932.2-201ENST00000435436 679 ntBASIC12.68□□□□□ -0.38
SOX2P48431 AL162726.2-201ENST00000438986 1017 ntBASIC12.68□□□□□ -0.38
SOX2P48431 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC12.68□□□□□ -0.38
SOX2P48431 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 NAA60-208ENST00000570819 833 ntTSL 2 BASIC12.68□□□□□ -0.38
SOX2P48431 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC12.68□□□□□ -0.38
SOX2P48431 DNM3-201ENST00000355305 3280 ntTSL 5 BASIC12.68□□□□□ -0.38
SOX2P48431 TBX3-202ENST00000349155 4723 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
SOX2P48431 FOSB-212ENST00000592811 3089 ntTSL 2 BASIC12.68□□□□□ -0.38
SOX2P48431 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 LINC00567-201ENST00000569854 3409 ntBASIC12.68□□□□□ -0.38
SOX2P48431 CEMIP-203ENST00000394685 7357 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 IL11RA-208ENST00000555003 3008 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
SOX2P48431 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC12.68□□□□□ -0.38
SOX2P48431 TSPEAR-AS1-202ENST00000451035 2108 ntTSL 5 BASIC12.68□□□□□ -0.38
SOX2P48431 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
SOX2P48431 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 CCNE2-205ENST00000520509 3330 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
SOX2P48431 SAMD4A-201ENST00000251091 6565 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 AXL-203ENST00000593513 2557 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
SOX2P48431 ETS2-201ENST00000360214 3936 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
SOX2P48431 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
SOX2P48431 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 FANCC-201ENST00000289081 4585 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 CCT6P3-201ENST00000419314 3702 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 BDH1-203ENST00000392379 3546 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
SOX2P48431 PCDHB18P-202ENST00000526308 3197 ntBASIC12.67□□□□□ -0.38
SOX2P48431 NISCH-207ENST00000479054 5173 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 NRP2-204ENST00000360409 6662 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 PRPF40B-209ENST00000548825 3307 ntAPPRIS P2 TSL 5 BASIC12.67□□□□□ -0.38
SOX2P48431 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 KIF1A-213ENST00000498729 9221 ntTSL 5 BASIC12.67□□□□□ -0.38
SOX2P48431 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 STRA6-203ENST00000416286 2750 ntTSL 5 BASIC12.67□□□□□ -0.38
SOX2P48431 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
SOX2P48431 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 ELK1P1-201ENST00000485699 580 ntBASIC12.67□□□□□ -0.38
SOX2P48431 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC12.67□□□□□ -0.38
SOX2P48431 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 AC068587.3-201ENST00000526613 355 ntBASIC12.67□□□□□ -0.38
SOX2P48431 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC12.67□□□□□ -0.38
SOX2P48431 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC12.67□□□□□ -0.38
SOX2P48431 AC009486.1-201ENST00000569860 813 ntBASIC12.67□□□□□ -0.38
SOX2P48431 PAM16-204ENST00000571941 674 ntTSL 3 BASIC12.67□□□□□ -0.38
SOX2P48431 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
SOX2P48431 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
SOX2P48431 WDR88-203ENST00000592765 651 ntTSL 5 BASIC12.67□□□□□ -0.38
SOX2P48431 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC12.67□□□□□ -0.38
SOX2P48431 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms