Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC15.07■□□□□ 0
BDNFP23560 AC103691.2-201ENST00000618824 433 ntBASIC15.07■□□□□ 0
BDNFP23560 AC051619.9-201ENST00000623237 597 ntBASIC15.07■□□□□ 0
BDNFP23560 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC15.07■□□□□ 0
BDNFP23560 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC15.07■□□□□ 0
BDNFP23560 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
BDNFP23560 FOXRED2-201ENST00000216187 3933 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
BDNFP23560 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
BDNFP23560 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
BDNFP23560 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
BDNFP23560 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC15.07■□□□□ 0
BDNFP23560 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
BDNFP23560 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
BDNFP23560 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
BDNFP23560 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC15.07■□□□□ 0
BDNFP23560 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
BDNFP23560 AC007952.5-201ENST00000572818 1486 ntBASIC15.07■□□□□ 0
BDNFP23560 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC15.07■□□□□ 0
BDNFP23560 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC15.07■□□□□ 0
BDNFP23560 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
BDNFP23560 AC005089.1-201ENST00000619486 2241 ntBASIC15.07■□□□□ 0
BDNFP23560 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.07■□□□□ 0
BDNFP23560 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC15.06■□□□□ 0
BDNFP23560 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.06■□□□□ 0
BDNFP23560 FRMD3-201ENST00000304195 5297 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 AP000550.1-201ENST00000420508 4833 ntTSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
BDNFP23560 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC15.06■□□□□ 0
BDNFP23560 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
BDNFP23560 AC067931.2-201ENST00000623655 2003 ntBASIC15.06■□□□□ 0
BDNFP23560 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 FUNDC2P2-201ENST00000331369 1223 ntTSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 AC026316.1-201ENST00000398900 414 ntBASIC15.06■□□□□ 0
BDNFP23560 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC15.06■□□□□ 0
BDNFP23560 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC15.06■□□□□ 0
BDNFP23560 FTH1P22-201ENST00000456305 520 ntBASIC15.06■□□□□ 0
BDNFP23560 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC15.06■□□□□ 0
BDNFP23560 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC15.06■□□□□ 0
BDNFP23560 CFL1-214ENST00000534769 758 ntTSL 2 BASIC15.06■□□□□ 0
BDNFP23560 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC15.06■□□□□ 0
BDNFP23560 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC15.06■□□□□ 0
BDNFP23560 MIR4522-201ENST00000584932 87 ntBASIC15.06■□□□□ 0
BDNFP23560 AC103810.10-201ENST00000606504 343 ntBASIC15.06■□□□□ 0
BDNFP23560 AC009560.1-201ENST00000620208 434 ntBASIC15.06■□□□□ 0
BDNFP23560 AC128714.1-201ENST00000637035 887 ntBASIC15.06■□□□□ 0
BDNFP23560 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC15.06■□□□□ 0
BDNFP23560 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC15.06■□□□□ 0
BDNFP23560 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC15.06■□□□□ 0
BDNFP23560 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC15.06■□□□□ 0
BDNFP23560 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
BDNFP23560 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC15.06■□□□□ 0
BDNFP23560 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC15.06■□□□□ 0
BDNFP23560 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
BDNFP23560 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.06■□□□□ 0
BDNFP23560 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
BDNFP23560 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
BDNFP23560 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
BDNFP23560 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.06■□□□□ 0
BDNFP23560 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
BDNFP23560 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC15.06■□□□□ 0
BDNFP23560 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC15.05■□□□□ 0
BDNFP23560 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC15.05■□□□□ 0
BDNFP23560 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC15.05■□□□□ 0
BDNFP23560 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
BDNFP23560 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
BDNFP23560 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
BDNFP23560 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
BDNFP23560 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
BDNFP23560 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.05■□□□□ 0
BDNFP23560 NAA60-202ENST00000407558 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
BDNFP23560 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
BDNFP23560 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
BDNFP23560 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ 0
BDNFP23560 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
BDNFP23560 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC15.05■□□□□ -0
BDNFP23560 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
BDNFP23560 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
BDNFP23560 USP17L6P-201ENST00000382470 1197 ntBASIC15.05■□□□□ -0
BDNFP23560 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC15.05■□□□□ -0
BDNFP23560 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
BDNFP23560 AC092506.1-202ENST00000401022 528 ntBASIC15.05■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms