Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.15■□□□□ 0.82
CLCF1Q9UBD9 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CLCF1Q9UBD9 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CLCF1Q9UBD9 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.14■□□□□ 0.81
CLCF1Q9UBD9 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLCF1Q9UBD9 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLCF1Q9UBD9 AL138724.1-201ENST00000606771 1088 ntBASIC20.14■□□□□ 0.81
CLCF1Q9UBD9 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLCF1Q9UBD9 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CLCF1Q9UBD9 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLCF1Q9UBD9 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLCF1Q9UBD9 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLCF1Q9UBD9 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLCF1Q9UBD9 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLCF1Q9UBD9 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.13■□□□□ 0.81
CLCF1Q9UBD9 AC009086.3-201ENST00000623486 1008 ntBASIC20.13■□□□□ 0.81
CLCF1Q9UBD9 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLCF1Q9UBD9 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC20.13■□□□□ 0.81
CLCF1Q9UBD9 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLCF1Q9UBD9 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLCF1Q9UBD9 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLCF1Q9UBD9 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLCF1Q9UBD9 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CLCF1Q9UBD9 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
CLCF1Q9UBD9 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.12■□□□□ 0.81
CLCF1Q9UBD9 AC006455.2-201ENST00000429931 906 ntBASIC20.12■□□□□ 0.81
CLCF1Q9UBD9 SUDS3P1-201ENST00000505831 966 ntBASIC20.12■□□□□ 0.81
CLCF1Q9UBD9 AC142381.2-201ENST00000566120 298 ntBASIC20.12■□□□□ 0.81
CLCF1Q9UBD9 MIR4767-201ENST00000582827 78 ntBASIC20.12■□□□□ 0.81
CLCF1Q9UBD9 AC011298.3-201ENST00000615796 283 ntBASIC20.12■□□□□ 0.81
CLCF1Q9UBD9 AL355001.2-201ENST00000620617 1191 ntBASIC20.12■□□□□ 0.81
CLCF1Q9UBD9 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CLCF1Q9UBD9 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLCF1Q9UBD9 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CLCF1Q9UBD9 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CLCF1Q9UBD9 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.11■□□□□ 0.81
CLCF1Q9UBD9 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLCF1Q9UBD9 LINC00543-201ENST00000567234 1845 ntBASIC20.11■□□□□ 0.81
CLCF1Q9UBD9 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
CLCF1Q9UBD9 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.11■□□□□ 0.81
CLCF1Q9UBD9 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.11■□□□□ 0.81
CLCF1Q9UBD9 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLCF1Q9UBD9 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLCF1Q9UBD9 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLCF1Q9UBD9 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLCF1Q9UBD9 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLCF1Q9UBD9 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC20.1■□□□□ 0.81
CLCF1Q9UBD9 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLCF1Q9UBD9 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLCF1Q9UBD9 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLCF1Q9UBD9 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLCF1Q9UBD9 AL139125.2-201ENST00000623134 1869 ntBASIC20.1■□□□□ 0.81
CLCF1Q9UBD9 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLCF1Q9UBD9 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.1■□□□□ 0.81
CLCF1Q9UBD9 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.1■□□□□ 0.81
CLCF1Q9UBD9 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CLCF1Q9UBD9 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
CLCF1Q9UBD9 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
CLCF1Q9UBD9 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CLCF1Q9UBD9 LINC01124-201ENST00000409786 2117 ntBASIC20.09■□□□□ 0.81
CLCF1Q9UBD9 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.09■□□□□ 0.81
CLCF1Q9UBD9 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
CLCF1Q9UBD9 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
CLCF1Q9UBD9 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CLCF1Q9UBD9 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.09■□□□□ 0.81
CLCF1Q9UBD9 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.09■□□□□ 0.81
CLCF1Q9UBD9 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC20.09■□□□□ 0.81
CLCF1Q9UBD9 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
CLCF1Q9UBD9 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLCF1Q9UBD9 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLCF1Q9UBD9 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.09■□□□□ 0.81
CLCF1Q9UBD9 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
CLCF1Q9UBD9 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CLCF1Q9UBD9 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CLCF1Q9UBD9 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC20.08■□□□□ 0.81
CLCF1Q9UBD9 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CLCF1Q9UBD9 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.08■□□□□ 0.81
CLCF1Q9UBD9 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLCF1Q9UBD9 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLCF1Q9UBD9 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
CLCF1Q9UBD9 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC20.07■□□□□ 0.8
CLCF1Q9UBD9 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLCF1Q9UBD9 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLCF1Q9UBD9 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CLCF1Q9UBD9 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.07■□□□□ 0.8
CLCF1Q9UBD9 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.07■□□□□ 0.8
CLCF1Q9UBD9 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.07■□□□□ 0.8
CLCF1Q9UBD9 AP001330.3-201ENST00000520123 633 ntBASIC20.07■□□□□ 0.8
CLCF1Q9UBD9 AF213884.3-201ENST00000563833 479 ntBASIC20.07■□□□□ 0.8
CLCF1Q9UBD9 MIR3181-201ENST00000578512 73 ntBASIC20.07■□□□□ 0.8
CLCF1Q9UBD9 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC20.07■□□□□ 0.8
CLCF1Q9UBD9 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.07■□□□□ 0.8
CLCF1Q9UBD9 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLCF1Q9UBD9 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLCF1Q9UBD9 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLCF1Q9UBD9 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLCF1Q9UBD9 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLCF1Q9UBD9 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLCF1Q9UBD9 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLCF1Q9UBD9 MIR939-201ENST00000401314 82 ntBASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms