Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
CHMP1AQ9HD42 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP1AQ9HD42 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP1AQ9HD42 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP1AQ9HD42 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP1AQ9HD42 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP1AQ9HD42 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP1AQ9HD42 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP1AQ9HD42 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP1AQ9HD42 SSSCA1-AS1-201ENST00000567594 614 ntBASIC19.29■□□□□ 0.68
CHMP1AQ9HD42 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP1AQ9HD42 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
CHMP1AQ9HD42 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC19.29■□□□□ 0.68
CHMP1AQ9HD42 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC19.29■□□□□ 0.68
CHMP1AQ9HD42 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC19.29■□□□□ 0.68
CHMP1AQ9HD42 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP1AQ9HD42 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.28■□□□□ 0.68
CHMP1AQ9HD42 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
CHMP1AQ9HD42 AC087393.1-201ENST00000582896 145 ntBASIC19.28■□□□□ 0.68
CHMP1AQ9HD42 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP1AQ9HD42 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CHMP1AQ9HD42 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP1AQ9HD42 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
CHMP1AQ9HD42 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP1AQ9HD42 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP1AQ9HD42 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
CHMP1AQ9HD42 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
CHMP1AQ9HD42 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
CHMP1AQ9HD42 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
CHMP1AQ9HD42 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP1AQ9HD42 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP1AQ9HD42 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP1AQ9HD42 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP1AQ9HD42 IDNK-203ENST00000405990 629 ntTSL 2 BASIC19.27■□□□□ 0.68
CHMP1AQ9HD42 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP1AQ9HD42 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP1AQ9HD42 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP1AQ9HD42 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
CHMP1AQ9HD42 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.67
CHMP1AQ9HD42 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
CHMP1AQ9HD42 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CHMP1AQ9HD42 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC19.27■□□□□ 0.67
CHMP1AQ9HD42 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
CHMP1AQ9HD42 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CHMP1AQ9HD42 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP1AQ9HD42 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP1AQ9HD42 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.26■□□□□ 0.67
CHMP1AQ9HD42 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP1AQ9HD42 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.26■□□□□ 0.67
CHMP1AQ9HD42 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC19.26■□□□□ 0.67
CHMP1AQ9HD42 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP1AQ9HD42 DUX4L9-201ENST00000449051 1259 ntBASIC19.26■□□□□ 0.67
CHMP1AQ9HD42 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC19.26■□□□□ 0.67
CHMP1AQ9HD42 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP1AQ9HD42 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC19.26■□□□□ 0.67
CHMP1AQ9HD42 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC19.26■□□□□ 0.67
CHMP1AQ9HD42 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CHMP1AQ9HD42 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP1AQ9HD42 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHMP1AQ9HD42 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC19.25■□□□□ 0.67
CHMP1AQ9HD42 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP1AQ9HD42 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CHMP1AQ9HD42 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
CHMP1AQ9HD42 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP1AQ9HD42 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP1AQ9HD42 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
CHMP1AQ9HD42 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP1AQ9HD42 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC19.25■□□□□ 0.67
CHMP1AQ9HD42 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP1AQ9HD42 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHMP1AQ9HD42 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP1AQ9HD42 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP1AQ9HD42 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC19.24■□□□□ 0.67
CHMP1AQ9HD42 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC19.24■□□□□ 0.67
CHMP1AQ9HD42 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP1AQ9HD42 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC19.24■□□□□ 0.67
CHMP1AQ9HD42 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP1AQ9HD42 AL161729.1-201ENST00000604104 1402 ntBASIC19.24■□□□□ 0.67
CHMP1AQ9HD42 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.24■□□□□ 0.67
CHMP1AQ9HD42 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP1AQ9HD42 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHMP1AQ9HD42 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
CHMP1AQ9HD42 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP1AQ9HD42 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC19.23■□□□□ 0.67
CHMP1AQ9HD42 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP1AQ9HD42 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
CHMP1AQ9HD42 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
CHMP1AQ9HD42 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC19.23■□□□□ 0.67
CHMP1AQ9HD42 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP1AQ9HD42 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC19.23■□□□□ 0.67
CHMP1AQ9HD42 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CHMP1AQ9HD42 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CHMP1AQ9HD42 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP1AQ9HD42 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP1AQ9HD42 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP1AQ9HD42 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP1AQ9HD42 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP1AQ9HD42 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP1AQ9HD42 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHMP1AQ9HD42 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms