Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 MIR6722-201ENST00000617286 78 ntBASIC21.63■■□□□ 1.05
BRF2Q9HAW0 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.63■■□□□ 1.05
BRF2Q9HAW0 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
BRF2Q9HAW0 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.63■■□□□ 1.05
BRF2Q9HAW0 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.63■■□□□ 1.05
BRF2Q9HAW0 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.63■■□□□ 1.05
BRF2Q9HAW0 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
BRF2Q9HAW0 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
BRF2Q9HAW0 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
BRF2Q9HAW0 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
BRF2Q9HAW0 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
BRF2Q9HAW0 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
BRF2Q9HAW0 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.62■■□□□ 1.05
BRF2Q9HAW0 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
BRF2Q9HAW0 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
BRF2Q9HAW0 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
BRF2Q9HAW0 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.62■■□□□ 1.05
BRF2Q9HAW0 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.62■■□□□ 1.05
BRF2Q9HAW0 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
BRF2Q9HAW0 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
BRF2Q9HAW0 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
BRF2Q9HAW0 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
BRF2Q9HAW0 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
BRF2Q9HAW0 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.61■■□□□ 1.05
BRF2Q9HAW0 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
BRF2Q9HAW0 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
BRF2Q9HAW0 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.61■■□□□ 1.05
BRF2Q9HAW0 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
BRF2Q9HAW0 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
BRF2Q9HAW0 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
BRF2Q9HAW0 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.61■■□□□ 1.05
BRF2Q9HAW0 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.61■■□□□ 1.05
BRF2Q9HAW0 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.6■■□□□ 1.05
BRF2Q9HAW0 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.6■■□□□ 1.05
BRF2Q9HAW0 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.6■■□□□ 1.05
BRF2Q9HAW0 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
BRF2Q9HAW0 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC21.6■■□□□ 1.05
BRF2Q9HAW0 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.6■■□□□ 1.05
BRF2Q9HAW0 Z92544.1-202ENST00000571933 1220 ntBASIC21.6■■□□□ 1.05
BRF2Q9HAW0 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
BRF2Q9HAW0 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
BRF2Q9HAW0 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
BRF2Q9HAW0 AC079630.1-202ENST00000618127 1840 ntBASIC21.59■■□□□ 1.05
BRF2Q9HAW0 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.59■■□□□ 1.05
BRF2Q9HAW0 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
BRF2Q9HAW0 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
BRF2Q9HAW0 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
BRF2Q9HAW0 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
BRF2Q9HAW0 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
BRF2Q9HAW0 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.59■■□□□ 1.05
BRF2Q9HAW0 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC21.59■■□□□ 1.05
BRF2Q9HAW0 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
BRF2Q9HAW0 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.59■■□□□ 1.05
BRF2Q9HAW0 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.59■■□□□ 1.05
BRF2Q9HAW0 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
BRF2Q9HAW0 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
BRF2Q9HAW0 C9orf163-202ENST00000624034 2573 ntBASIC21.59■■□□□ 1.05
BRF2Q9HAW0 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
BRF2Q9HAW0 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
BRF2Q9HAW0 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
BRF2Q9HAW0 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
BRF2Q9HAW0 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
BRF2Q9HAW0 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
BRF2Q9HAW0 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.57■■□□□ 1.04
BRF2Q9HAW0 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
BRF2Q9HAW0 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.57■■□□□ 1.04
BRF2Q9HAW0 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.57■■□□□ 1.04
BRF2Q9HAW0 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
BRF2Q9HAW0 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
BRF2Q9HAW0 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
BRF2Q9HAW0 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.57■■□□□ 1.04
BRF2Q9HAW0 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
BRF2Q9HAW0 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
BRF2Q9HAW0 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.57■■□□□ 1.04
BRF2Q9HAW0 RARRES2P1-201ENST00000474487 481 ntBASIC21.57■■□□□ 1.04
BRF2Q9HAW0 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.57■■□□□ 1.04
BRF2Q9HAW0 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
BRF2Q9HAW0 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
BRF2Q9HAW0 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.57■■□□□ 1.04
BRF2Q9HAW0 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
BRF2Q9HAW0 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
BRF2Q9HAW0 AC005703.6-201ENST00000623265 1329 ntBASIC21.56■■□□□ 1.04
BRF2Q9HAW0 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
BRF2Q9HAW0 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
BRF2Q9HAW0 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
BRF2Q9HAW0 KRT125P-201ENST00000546827 989 ntBASIC21.56■■□□□ 1.04
BRF2Q9HAW0 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
BRF2Q9HAW0 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
BRF2Q9HAW0 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.56■■□□□ 1.04
BRF2Q9HAW0 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.56■■□□□ 1.04
BRF2Q9HAW0 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
BRF2Q9HAW0 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
BRF2Q9HAW0 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
BRF2Q9HAW0 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
BRF2Q9HAW0 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.55■■□□□ 1.04
BRF2Q9HAW0 AC092028.1-203ENST00000608262 953 ntBASIC21.55■■□□□ 1.04
BRF2Q9HAW0 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.55■■□□□ 1.04
BRF2Q9HAW0 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.55■■□□□ 1.04
BRF2Q9HAW0 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
BRF2Q9HAW0 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms