Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC19.82■□□□□ 0.76
LIME1Q9H400 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LIME1Q9H400 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC19.82■□□□□ 0.76
LIME1Q9H400 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIME1Q9H400 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC19.81■□□□□ 0.76
LIME1Q9H400 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC19.81■□□□□ 0.76
LIME1Q9H400 AC133561.1-201ENST00000568600 2415 ntBASIC19.81■□□□□ 0.76
LIME1Q9H400 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC19.81■□□□□ 0.76
LIME1Q9H400 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.81■□□□□ 0.76
LIME1Q9H400 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
LIME1Q9H400 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIME1Q9H400 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.81■□□□□ 0.76
LIME1Q9H400 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.81■□□□□ 0.76
LIME1Q9H400 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC19.81■□□□□ 0.76
LIME1Q9H400 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIME1Q9H400 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LIME1Q9H400 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LIME1Q9H400 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIME1Q9H400 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC19.8■□□□□ 0.76
LIME1Q9H400 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIME1Q9H400 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIME1Q9H400 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIME1Q9H400 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LIME1Q9H400 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC19.8■□□□□ 0.76
LIME1Q9H400 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
LIME1Q9H400 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIME1Q9H400 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19.79■□□□□ 0.76
LIME1Q9H400 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LIME1Q9H400 SERBP1P1-201ENST00000396021 1160 ntBASIC19.79■□□□□ 0.76
LIME1Q9H400 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIME1Q9H400 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
LIME1Q9H400 AC008764.7-201ENST00000593779 1081 ntBASIC19.79■□□□□ 0.76
LIME1Q9H400 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.79■□□□□ 0.76
LIME1Q9H400 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LIME1Q9H400 RASA4CP-201ENST00000424092 1398 ntBASIC19.79■□□□□ 0.76
LIME1Q9H400 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
LIME1Q9H400 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC19.79■□□□□ 0.76
LIME1Q9H400 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC19.79■□□□□ 0.76
LIME1Q9H400 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC19.79■□□□□ 0.76
LIME1Q9H400 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIME1Q9H400 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
LIME1Q9H400 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
LIME1Q9H400 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIME1Q9H400 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIME1Q9H400 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC19.78■□□□□ 0.76
LIME1Q9H400 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIME1Q9H400 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIME1Q9H400 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LIME1Q9H400 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC19.77■□□□□ 0.76
LIME1Q9H400 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIME1Q9H400 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIME1Q9H400 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIME1Q9H400 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.77■□□□□ 0.76
LIME1Q9H400 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC19.77■□□□□ 0.76
LIME1Q9H400 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIME1Q9H400 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LIME1Q9H400 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
LIME1Q9H400 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
LIME1Q9H400 AC005703.6-201ENST00000623265 1329 ntBASIC19.76■□□□□ 0.75
LIME1Q9H400 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIME1Q9H400 LINC00543-201ENST00000567234 1845 ntBASIC19.76■□□□□ 0.75
LIME1Q9H400 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIME1Q9H400 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
LIME1Q9H400 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIME1Q9H400 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.76■□□□□ 0.75
LIME1Q9H400 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIME1Q9H400 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
LIME1Q9H400 AC099791.2-201ENST00000605725 427 ntBASIC19.76■□□□□ 0.75
LIME1Q9H400 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIME1Q9H400 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC19.75■□□□□ 0.75
LIME1Q9H400 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIME1Q9H400 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
LIME1Q9H400 IRS3P-201ENST00000223076 1006 ntBASIC19.75■□□□□ 0.75
LIME1Q9H400 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.75■□□□□ 0.75
LIME1Q9H400 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIME1Q9H400 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
LIME1Q9H400 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIME1Q9H400 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
LIME1Q9H400 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC19.74■□□□□ 0.75
LIME1Q9H400 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIME1Q9H400 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.74■□□□□ 0.75
LIME1Q9H400 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIME1Q9H400 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC19.74■□□□□ 0.75
LIME1Q9H400 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
LIME1Q9H400 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
LIME1Q9H400 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIME1Q9H400 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIME1Q9H400 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIME1Q9H400 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
LIME1Q9H400 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.73■□□□□ 0.75
LIME1Q9H400 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.73■□□□□ 0.75
LIME1Q9H400 AC090192.1-201ENST00000517740 490 ntBASIC19.73■□□□□ 0.75
LIME1Q9H400 AC027682.1-201ENST00000562846 899 ntBASIC19.73■□□□□ 0.75
LIME1Q9H400 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC19.73■□□□□ 0.75
LIME1Q9H400 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIME1Q9H400 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
LIME1Q9H400 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
LIME1Q9H400 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIME1Q9H400 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
LIME1Q9H400 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms