Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC38.26■■■■□ 3.72
IFT140Q96RY7 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC38.26■■■■□ 3.72
IFT140Q96RY7 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC38.26■■■■□ 3.72
IFT140Q96RY7 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC38.26■■■■□ 3.72
IFT140Q96RY7 CROCCP5-201ENST00000436658 830 ntBASIC38.26■■■■□ 3.72
IFT140Q96RY7 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC38.26■■■■□ 3.72
IFT140Q96RY7 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC38.26■■■■□ 3.71
IFT140Q96RY7 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC38.26■■■■□ 3.71
IFT140Q96RY7 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC38.26■■■■□ 3.71
IFT140Q96RY7 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC38.25■■■■□ 3.71
IFT140Q96RY7 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC38.25■■■■□ 3.71
IFT140Q96RY7 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC38.25■■■■□ 3.71
IFT140Q96RY7 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC38.24■■■■□ 3.71
IFT140Q96RY7 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC38.24■■■■□ 3.71
IFT140Q96RY7 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC38.24■■■■□ 3.71
IFT140Q96RY7 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC38.24■■■■□ 3.71
IFT140Q96RY7 AC016769.1-201ENST00000409132 1010 ntBASIC38.24■■■■□ 3.71
IFT140Q96RY7 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC38.24■■■■□ 3.71
IFT140Q96RY7 AC137761.2-201ENST00000561729 223 ntBASIC38.24■■■■□ 3.71
IFT140Q96RY7 AC145350.3-201ENST00000569033 163 ntBASIC38.24■■■■□ 3.71
IFT140Q96RY7 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC38.23■■■■□ 3.71
IFT140Q96RY7 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC38.23■■■■□ 3.71
IFT140Q96RY7 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC38.23■■■■□ 3.71
IFT140Q96RY7 ERN1-208ENST00000606895 2068 ntBASIC38.23■■■■□ 3.71
IFT140Q96RY7 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC38.23■■■■□ 3.71
IFT140Q96RY7 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC38.23■■■■□ 3.71
IFT140Q96RY7 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC38.22■■■■□ 3.71
IFT140Q96RY7 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC38.22■■■■□ 3.71
IFT140Q96RY7 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC38.22■■■■□ 3.71
IFT140Q96RY7 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC38.22■■■■□ 3.71
IFT140Q96RY7 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC38.22■■■■□ 3.71
IFT140Q96RY7 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC38.22■■■■□ 3.71
IFT140Q96RY7 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC38.22■■■■□ 3.71
IFT140Q96RY7 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC38.22■■■■□ 3.71
IFT140Q96RY7 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC38.22■■■■□ 3.71
IFT140Q96RY7 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC38.22■■■■□ 3.71
IFT140Q96RY7 AL109923.1-201ENST00000618799 583 ntBASIC38.22■■■■□ 3.71
IFT140Q96RY7 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC38.21■■■■□ 3.71
IFT140Q96RY7 AC141586.4-201ENST00000624558 1573 ntBASIC38.21■■■■□ 3.71
IFT140Q96RY7 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC38.21■■■■□ 3.71
IFT140Q96RY7 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC38.21■■■■□ 3.71
IFT140Q96RY7 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC38.21■■■■□ 3.71
IFT140Q96RY7 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC38.21■■■■□ 3.71
IFT140Q96RY7 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC38.21■■■■□ 3.71
IFT140Q96RY7 STX7-201ENST00000367937 1090 ntTSL 5 BASIC38.21■■■■□ 3.71
IFT140Q96RY7 AP005435.1-201ENST00000529293 1178 ntBASIC38.21■■■■□ 3.71
IFT140Q96RY7 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC38.21■■■■□ 3.71
IFT140Q96RY7 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC38.2■■■■□ 3.71
IFT140Q96RY7 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC38.2■■■■□ 3.71
IFT140Q96RY7 MPST-204ENST00000404393 1329 ntTSL 5 BASIC38.2■■■■□ 3.71
IFT140Q96RY7 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC38.2■■■■□ 3.71
IFT140Q96RY7 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC38.2■■■■□ 3.71
IFT140Q96RY7 LHPP-203ENST00000392757 840 ntTSL 3 BASIC38.2■■■■□ 3.71
IFT140Q96RY7 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC38.2■■■■□ 3.71
IFT140Q96RY7 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC38.19■■■■□ 3.7
IFT140Q96RY7 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC38.19■■■■□ 3.7
IFT140Q96RY7 DBI-210ENST00000542275 757 ntTSL 5 BASIC38.19■■■■□ 3.7
IFT140Q96RY7 MIR6089-201ENST00000616698 64 ntBASIC38.19■■■■□ 3.7
IFT140Q96RY7 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC38.19■■■■□ 3.7
IFT140Q96RY7 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC38.18■■■■□ 3.7
IFT140Q96RY7 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC38.18■■■■□ 3.7
IFT140Q96RY7 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC38.18■■■■□ 3.7
IFT140Q96RY7 NCF1B-203ENST00000435988 1254 ntBASIC38.18■■■■□ 3.7
IFT140Q96RY7 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC38.18■■■■□ 3.7
IFT140Q96RY7 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC38.18■■■■□ 3.7
IFT140Q96RY7 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC38.18■■■■□ 3.7
IFT140Q96RY7 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC38.18■■■■□ 3.7
IFT140Q96RY7 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC38.17■■■■□ 3.7
IFT140Q96RY7 AC006970.2-201ENST00000450065 779 ntBASIC38.17■■■■□ 3.7
IFT140Q96RY7 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC38.17■■■■□ 3.7
IFT140Q96RY7 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC38.17■■■■□ 3.7
IFT140Q96RY7 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC38.17■■■■□ 3.7
IFT140Q96RY7 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC38.17■■■■□ 3.7
IFT140Q96RY7 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC38.17■■■■□ 3.7
IFT140Q96RY7 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC38.17■■■■□ 3.7
IFT140Q96RY7 OR2I1P-207ENST00000453522 948 ntBASIC38.16■■■■□ 3.7
IFT140Q96RY7 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC38.16■■■■□ 3.7
IFT140Q96RY7 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC38.16■■■■□ 3.7
IFT140Q96RY7 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC38.16■■■■□ 3.7
IFT140Q96RY7 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC38.16■■■■□ 3.7
IFT140Q96RY7 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC38.16■■■■□ 3.7
IFT140Q96RY7 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC38.15■■■■□ 3.7
IFT140Q96RY7 GALNS-213ENST00000569433 723 ntTSL 3 BASIC38.15■■■■□ 3.7
IFT140Q96RY7 WWOX-218ENST00000627394 894 ntTSL 5 BASIC38.15■■■■□ 3.7
IFT140Q96RY7 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC38.15■■■■□ 3.7
IFT140Q96RY7 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC38.15■■■■□ 3.7
IFT140Q96RY7 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC38.15■■■■□ 3.7
IFT140Q96RY7 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC38.14■■■■□ 3.7
IFT140Q96RY7 AC010525.1-201ENST00000585559 441 ntBASIC38.14■■■■□ 3.7
IFT140Q96RY7 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC38.14■■■■□ 3.7
IFT140Q96RY7 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC38.14■■■■□ 3.7
IFT140Q96RY7 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC38.13■■■■□ 3.69
IFT140Q96RY7 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC38.13■■■■□ 3.69
IFT140Q96RY7 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC38.13■■■■□ 3.69
IFT140Q96RY7 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC38.13■■■■□ 3.69
IFT140Q96RY7 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC38.13■■■■□ 3.69
IFT140Q96RY7 BID-214ENST00000617586 542 ntTSL 5 BASIC38.13■■■■□ 3.69
IFT140Q96RY7 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC38.12■■■■□ 3.69
IFT140Q96RY7 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC38.12■■■■□ 3.69
IFT140Q96RY7 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC38.12■■■■□ 3.69
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms