Protein–RNA interactions for Protein: Q96JI7

SPG11, Spatacsin, humanhuman

Predictions only

Length 2,443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11Q96JI7 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SPG11Q96JI7 AC091060.1-201ENST00000623524 1766 ntBASIC19.31■□□□□ 0.68
SPG11Q96JI7 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.31■□□□□ 0.68
SPG11Q96JI7 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SPG11Q96JI7 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
SPG11Q96JI7 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SPG11Q96JI7 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SPG11Q96JI7 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SPG11Q96JI7 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SPG11Q96JI7 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SPG11Q96JI7 MIR6084-201ENST00000622012 110 ntBASIC19.31■□□□□ 0.68
SPG11Q96JI7 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC19.3■□□□□ 0.68
SPG11Q96JI7 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19.3■□□□□ 0.68
SPG11Q96JI7 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SPG11Q96JI7 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.3■□□□□ 0.68
SPG11Q96JI7 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SPG11Q96JI7 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SPG11Q96JI7 IGHV3-19-201ENST00000521488 291 ntBASIC19.3■□□□□ 0.68
SPG11Q96JI7 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SPG11Q96JI7 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
SPG11Q96JI7 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SPG11Q96JI7 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SPG11Q96JI7 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SPG11Q96JI7 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC19.3■□□□□ 0.68
SPG11Q96JI7 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SPG11Q96JI7 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.3■□□□□ 0.68
SPG11Q96JI7 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SPG11Q96JI7 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC19.29■□□□□ 0.68
SPG11Q96JI7 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.29■□□□□ 0.68
SPG11Q96JI7 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SPG11Q96JI7 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SPG11Q96JI7 STK32C-205ENST00000456004 607 ntTSL 2 BASIC19.29■□□□□ 0.68
SPG11Q96JI7 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC19.29■□□□□ 0.68
SPG11Q96JI7 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SPG11Q96JI7 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SPG11Q96JI7 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC19.29■□□□□ 0.68
SPG11Q96JI7 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC19.29■□□□□ 0.68
SPG11Q96JI7 TMEM202-AS1-202ENST00000565181 2325 ntBASIC19.29■□□□□ 0.68
SPG11Q96JI7 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SPG11Q96JI7 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SPG11Q96JI7 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SPG11Q96JI7 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.29■□□□□ 0.68
SPG11Q96JI7 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SPG11Q96JI7 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC19.29■□□□□ 0.68
SPG11Q96JI7 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SPG11Q96JI7 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.28■□□□□ 0.68
SPG11Q96JI7 AC016769.1-201ENST00000409132 1010 ntBASIC19.28■□□□□ 0.68
SPG11Q96JI7 KRT18P61-201ENST00000585825 1298 ntBASIC19.28■□□□□ 0.68
SPG11Q96JI7 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC19.28■□□□□ 0.68
SPG11Q96JI7 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.27■□□□□ 0.68
SPG11Q96JI7 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC19.27■□□□□ 0.68
SPG11Q96JI7 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.27■□□□□ 0.68
SPG11Q96JI7 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19.27■□□□□ 0.68
SPG11Q96JI7 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SPG11Q96JI7 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SPG11Q96JI7 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.27■□□□□ 0.68
SPG11Q96JI7 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SPG11Q96JI7 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SPG11Q96JI7 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
SPG11Q96JI7 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SPG11Q96JI7 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
SPG11Q96JI7 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SPG11Q96JI7 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SPG11Q96JI7 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC19.27■□□□□ 0.68
SPG11Q96JI7 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
SPG11Q96JI7 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC19.27■□□□□ 0.67
SPG11Q96JI7 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SPG11Q96JI7 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SPG11Q96JI7 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SPG11Q96JI7 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.26■□□□□ 0.67
SPG11Q96JI7 AL354811.1-201ENST00000610286 706 ntBASIC19.26■□□□□ 0.67
SPG11Q96JI7 pRNA.6-201ENST00000610482 90 ntBASIC19.26■□□□□ 0.67
SPG11Q96JI7 pRNA.5-201ENST00000612139 90 ntBASIC19.26■□□□□ 0.67
SPG11Q96JI7 pRNA.11-201ENST00000618423 90 ntBASIC19.26■□□□□ 0.67
SPG11Q96JI7 pRNA.13-201ENST00000619112 90 ntBASIC19.26■□□□□ 0.67
SPG11Q96JI7 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SPG11Q96JI7 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.26■□□□□ 0.67
SPG11Q96JI7 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SPG11Q96JI7 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC19.26■□□□□ 0.67
SPG11Q96JI7 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC19.26■□□□□ 0.67
SPG11Q96JI7 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.25■□□□□ 0.67
SPG11Q96JI7 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.25■□□□□ 0.67
SPG11Q96JI7 AC026185.1-201ENST00000445748 174 ntBASIC19.25■□□□□ 0.67
SPG11Q96JI7 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.25■□□□□ 0.67
SPG11Q96JI7 AC009086.3-201ENST00000623486 1008 ntBASIC19.25■□□□□ 0.67
SPG11Q96JI7 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
SPG11Q96JI7 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SPG11Q96JI7 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
SPG11Q96JI7 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SPG11Q96JI7 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SPG11Q96JI7 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
SPG11Q96JI7 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.25■□□□□ 0.67
SPG11Q96JI7 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SPG11Q96JI7 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC19.24■□□□□ 0.67
SPG11Q96JI7 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.24■□□□□ 0.67
SPG11Q96JI7 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.24■□□□□ 0.67
SPG11Q96JI7 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC19.24■□□□□ 0.67
SPG11Q96JI7 AC006015.1-201ENST00000429970 570 ntBASIC19.24■□□□□ 0.67
SPG11Q96JI7 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.24■□□□□ 0.67
SPG11Q96JI7 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms