Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLRN3Q8NCR9 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CLRN3Q8NCR9 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CLRN3Q8NCR9 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CLRN3Q8NCR9 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CLRN3Q8NCR9 ANOS2P-203ENST00000472227 1816 ntBASIC18.02■□□□□ 0.47
CLRN3Q8NCR9 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLRN3Q8NCR9 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLRN3Q8NCR9 AC026310.3-201ENST00000625186 2373 ntBASIC18.02■□□□□ 0.47
CLRN3Q8NCR9 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLRN3Q8NCR9 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLRN3Q8NCR9 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CLRN3Q8NCR9 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLRN3Q8NCR9 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLRN3Q8NCR9 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC18.01■□□□□ 0.47
CLRN3Q8NCR9 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLRN3Q8NCR9 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
CLRN3Q8NCR9 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC18.01■□□□□ 0.47
CLRN3Q8NCR9 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLRN3Q8NCR9 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLRN3Q8NCR9 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLRN3Q8NCR9 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLRN3Q8NCR9 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLRN3Q8NCR9 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLRN3Q8NCR9 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC18■□□□□ 0.47
CLRN3Q8NCR9 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC18■□□□□ 0.47
CLRN3Q8NCR9 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18■□□□□ 0.47
CLRN3Q8NCR9 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18■□□□□ 0.47
CLRN3Q8NCR9 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
CLRN3Q8NCR9 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18■□□□□ 0.47
CLRN3Q8NCR9 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLRN3Q8NCR9 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLRN3Q8NCR9 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC18■□□□□ 0.47
CLRN3Q8NCR9 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
CLRN3Q8NCR9 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
CLRN3Q8NCR9 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CLRN3Q8NCR9 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLRN3Q8NCR9 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
CLRN3Q8NCR9 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CLRN3Q8NCR9 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLRN3Q8NCR9 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC17.99■□□□□ 0.47
CLRN3Q8NCR9 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLRN3Q8NCR9 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CLRN3Q8NCR9 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC17.99■□□□□ 0.47
CLRN3Q8NCR9 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLRN3Q8NCR9 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLRN3Q8NCR9 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC17.99■□□□□ 0.47
CLRN3Q8NCR9 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLRN3Q8NCR9 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLRN3Q8NCR9 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC17.98■□□□□ 0.47
CLRN3Q8NCR9 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC17.98■□□□□ 0.47
CLRN3Q8NCR9 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLRN3Q8NCR9 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC17.98■□□□□ 0.47
CLRN3Q8NCR9 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLRN3Q8NCR9 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CLRN3Q8NCR9 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CLRN3Q8NCR9 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC17.98■□□□□ 0.47
CLRN3Q8NCR9 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLRN3Q8NCR9 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLRN3Q8NCR9 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.98■□□□□ 0.47
CLRN3Q8NCR9 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLRN3Q8NCR9 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
CLRN3Q8NCR9 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
CLRN3Q8NCR9 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLRN3Q8NCR9 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLRN3Q8NCR9 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLRN3Q8NCR9 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC17.97■□□□□ 0.47
CLRN3Q8NCR9 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLRN3Q8NCR9 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLRN3Q8NCR9 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CLRN3Q8NCR9 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CLRN3Q8NCR9 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLRN3Q8NCR9 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CLRN3Q8NCR9 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CLRN3Q8NCR9 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLRN3Q8NCR9 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLRN3Q8NCR9 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLRN3Q8NCR9 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CLRN3Q8NCR9 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
CLRN3Q8NCR9 LINC01521-201ENST00000504184 1943 ntBASIC17.96■□□□□ 0.47
CLRN3Q8NCR9 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLRN3Q8NCR9 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CLRN3Q8NCR9 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLRN3Q8NCR9 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLRN3Q8NCR9 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CLRN3Q8NCR9 AL020996.1-203ENST00000536896 2307 ntBASIC17.96■□□□□ 0.47
CLRN3Q8NCR9 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
CLRN3Q8NCR9 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CLRN3Q8NCR9 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CLRN3Q8NCR9 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLRN3Q8NCR9 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
CLRN3Q8NCR9 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CLRN3Q8NCR9 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLRN3Q8NCR9 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLRN3Q8NCR9 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CLRN3Q8NCR9 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CLRN3Q8NCR9 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CLRN3Q8NCR9 SETD8P1-201ENST00000623146 1180 ntBASIC17.95■□□□□ 0.46
CLRN3Q8NCR9 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.95■□□□□ 0.46
CLRN3Q8NCR9 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC17.95■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms