Protein–RNA interactions for Protein: Q8NC44

RETREG2, Reticulophagy regulator 2, humanhuman

Predictions only

Length 543 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG2Q8NC44 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC25.56■■□□□ 1.68
RETREG2Q8NC44 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
RETREG2Q8NC44 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
RETREG2Q8NC44 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
RETREG2Q8NC44 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC25.56■■□□□ 1.68
RETREG2Q8NC44 AL136967.2-201ENST00000623968 743 ntBASIC25.56■■□□□ 1.68
RETREG2Q8NC44 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC25.55■■□□□ 1.68
RETREG2Q8NC44 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC25.55■■□□□ 1.68
RETREG2Q8NC44 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
RETREG2Q8NC44 AC131274.2-201ENST00000580697 1507 ntBASIC25.55■■□□□ 1.68
RETREG2Q8NC44 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
RETREG2Q8NC44 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC25.55■■□□□ 1.68
RETREG2Q8NC44 AC104564.3-201ENST00000582367 638 ntBASIC25.55■■□□□ 1.68
RETREG2Q8NC44 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
RETREG2Q8NC44 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC25.55■■□□□ 1.68
RETREG2Q8NC44 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC25.55■■□□□ 1.68
RETREG2Q8NC44 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
RETREG2Q8NC44 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
RETREG2Q8NC44 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
RETREG2Q8NC44 AF213884.3-201ENST00000563833 479 ntBASIC25.54■■□□□ 1.68
RETREG2Q8NC44 AL022069.1-201ENST00000568025 1636 ntBASIC25.54■■□□□ 1.68
RETREG2Q8NC44 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
RETREG2Q8NC44 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
RETREG2Q8NC44 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC25.53■■□□□ 1.68
RETREG2Q8NC44 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC25.53■■□□□ 1.68
RETREG2Q8NC44 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
RETREG2Q8NC44 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC25.53■■□□□ 1.68
RETREG2Q8NC44 AC092171.4-201ENST00000609130 632 ntBASIC25.53■■□□□ 1.68
RETREG2Q8NC44 SF1-220ENST00000626028 704 ntTSL 2 BASIC25.53■■□□□ 1.68
RETREG2Q8NC44 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC25.53■■□□□ 1.68
RETREG2Q8NC44 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC25.53■■□□□ 1.68
RETREG2Q8NC44 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
RETREG2Q8NC44 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
RETREG2Q8NC44 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
RETREG2Q8NC44 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
RETREG2Q8NC44 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
RETREG2Q8NC44 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
RETREG2Q8NC44 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
RETREG2Q8NC44 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
RETREG2Q8NC44 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
RETREG2Q8NC44 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC25.52■■□□□ 1.68
RETREG2Q8NC44 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC25.52■■□□□ 1.68
RETREG2Q8NC44 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
RETREG2Q8NC44 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
RETREG2Q8NC44 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC25.52■■□□□ 1.68
RETREG2Q8NC44 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
RETREG2Q8NC44 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
RETREG2Q8NC44 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC25.52■■□□□ 1.68
RETREG2Q8NC44 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
RETREG2Q8NC44 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
RETREG2Q8NC44 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC25.51■■□□□ 1.67
RETREG2Q8NC44 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC25.51■■□□□ 1.67
RETREG2Q8NC44 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
RETREG2Q8NC44 SYT6-210ENST00000641643 1587 ntBASIC25.51■■□□□ 1.67
RETREG2Q8NC44 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
RETREG2Q8NC44 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
RETREG2Q8NC44 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
RETREG2Q8NC44 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
RETREG2Q8NC44 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC25.5■■□□□ 1.67
RETREG2Q8NC44 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC25.5■■□□□ 1.67
RETREG2Q8NC44 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC25.5■■□□□ 1.67
RETREG2Q8NC44 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
RETREG2Q8NC44 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
RETREG2Q8NC44 REST-206ENST00000612429 1376 ntTSL 5 BASIC25.49■■□□□ 1.67
RETREG2Q8NC44 REST-207ENST00000616975 1370 ntTSL 5 BASIC25.49■■□□□ 1.67
RETREG2Q8NC44 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
RETREG2Q8NC44 MIR939-201ENST00000401314 82 ntBASIC25.49■■□□□ 1.67
RETREG2Q8NC44 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
RETREG2Q8NC44 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC25.49■■□□□ 1.67
RETREG2Q8NC44 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC25.49■■□□□ 1.67
RETREG2Q8NC44 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC25.49■■□□□ 1.67
RETREG2Q8NC44 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
RETREG2Q8NC44 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
RETREG2Q8NC44 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
RETREG2Q8NC44 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC25.48■■□□□ 1.67
RETREG2Q8NC44 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
RETREG2Q8NC44 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
RETREG2Q8NC44 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC25.48■■□□□ 1.67
RETREG2Q8NC44 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC25.48■■□□□ 1.67
RETREG2Q8NC44 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
RETREG2Q8NC44 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
RETREG2Q8NC44 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
RETREG2Q8NC44 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC25.48■■□□□ 1.67
RETREG2Q8NC44 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
RETREG2Q8NC44 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC25.48■■□□□ 1.67
RETREG2Q8NC44 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
RETREG2Q8NC44 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
RETREG2Q8NC44 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC25.48■■□□□ 1.67
RETREG2Q8NC44 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC25.48■■□□□ 1.67
RETREG2Q8NC44 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
RETREG2Q8NC44 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
RETREG2Q8NC44 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
RETREG2Q8NC44 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
RETREG2Q8NC44 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC25.47■■□□□ 1.67
RETREG2Q8NC44 RBM38-205ENST00000440234 686 ntTSL 2 BASIC25.47■■□□□ 1.67
RETREG2Q8NC44 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
RETREG2Q8NC44 AP001330.3-201ENST00000520123 633 ntBASIC25.47■■□□□ 1.67
RETREG2Q8NC44 AC004812.2-201ENST00000611079 2094 ntBASIC25.47■■□□□ 1.67
RETREG2Q8NC44 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
RETREG2Q8NC44 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC25.47■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms