Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
LDB1Q86U70 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
LDB1Q86U70 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC22.55■■□□□ 1.2
LDB1Q86U70 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC22.55■■□□□ 1.2
LDB1Q86U70 REST-206ENST00000612429 1376 ntTSL 5 BASIC22.55■■□□□ 1.2
LDB1Q86U70 REST-207ENST00000616975 1370 ntTSL 5 BASIC22.55■■□□□ 1.2
LDB1Q86U70 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
LDB1Q86U70 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC22.55■■□□□ 1.2
LDB1Q86U70 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
LDB1Q86U70 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC22.55■■□□□ 1.2
LDB1Q86U70 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
LDB1Q86U70 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
LDB1Q86U70 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
LDB1Q86U70 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LDB1Q86U70 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC22.54■■□□□ 1.2
LDB1Q86U70 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LDB1Q86U70 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC22.54■■□□□ 1.2
LDB1Q86U70 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LDB1Q86U70 KRT125P-201ENST00000546827 989 ntBASIC22.54■■□□□ 1.2
LDB1Q86U70 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
LDB1Q86U70 MIR4787-201ENST00000607364 84 ntBASIC22.54■■□□□ 1.2
LDB1Q86U70 AC092028.1-203ENST00000608262 953 ntBASIC22.54■■□□□ 1.2
LDB1Q86U70 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC22.54■■□□□ 1.2
LDB1Q86U70 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LDB1Q86U70 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
LDB1Q86U70 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LDB1Q86U70 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC22.54■■□□□ 1.2
LDB1Q86U70 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC22.54■■□□□ 1.2
LDB1Q86U70 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
LDB1Q86U70 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC22.53■■□□□ 1.2
LDB1Q86U70 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
LDB1Q86U70 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
LDB1Q86U70 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
LDB1Q86U70 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
LDB1Q86U70 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
LDB1Q86U70 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
LDB1Q86U70 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC22.53■■□□□ 1.2
LDB1Q86U70 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC22.52■■□□□ 1.2
LDB1Q86U70 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC22.52■■□□□ 1.2
LDB1Q86U70 Z92544.1-202ENST00000571933 1220 ntBASIC22.52■■□□□ 1.2
LDB1Q86U70 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC22.52■■□□□ 1.2
LDB1Q86U70 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
LDB1Q86U70 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
LDB1Q86U70 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC22.52■■□□□ 1.2
LDB1Q86U70 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
LDB1Q86U70 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC22.52■■□□□ 1.19
LDB1Q86U70 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
LDB1Q86U70 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
LDB1Q86U70 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
LDB1Q86U70 CLTA-206ENST00000466396 695 ntTSL 2 BASIC22.51■■□□□ 1.19
LDB1Q86U70 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
LDB1Q86U70 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
LDB1Q86U70 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC22.51■■□□□ 1.19
LDB1Q86U70 AC068473.5-201ENST00000616428 2072 ntBASIC22.51■■□□□ 1.19
LDB1Q86U70 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
LDB1Q86U70 AC092068.2-201ENST00000590491 1708 ntBASIC22.51■■□□□ 1.19
LDB1Q86U70 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
LDB1Q86U70 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
LDB1Q86U70 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
LDB1Q86U70 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC22.5■■□□□ 1.19
LDB1Q86U70 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
LDB1Q86U70 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
LDB1Q86U70 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
LDB1Q86U70 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
LDB1Q86U70 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC22.5■■□□□ 1.19
LDB1Q86U70 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
LDB1Q86U70 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC22.49■■□□□ 1.19
LDB1Q86U70 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC22.49■■□□□ 1.19
LDB1Q86U70 TSPY9P-201ENST00000440215 945 ntBASIC22.49■■□□□ 1.19
LDB1Q86U70 TSPY11P-201ENST00000442607 1045 ntBASIC22.49■■□□□ 1.19
LDB1Q86U70 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC22.49■■□□□ 1.19
LDB1Q86U70 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
LDB1Q86U70 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC22.49■■□□□ 1.19
LDB1Q86U70 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
LDB1Q86U70 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC22.48■■□□□ 1.19
LDB1Q86U70 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
LDB1Q86U70 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LDB1Q86U70 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LDB1Q86U70 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
LDB1Q86U70 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
LDB1Q86U70 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC22.48■■□□□ 1.19
LDB1Q86U70 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC22.48■■□□□ 1.19
LDB1Q86U70 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
LDB1Q86U70 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
LDB1Q86U70 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
LDB1Q86U70 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
LDB1Q86U70 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC22.47■■□□□ 1.19
LDB1Q86U70 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
LDB1Q86U70 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC22.47■■□□□ 1.19
LDB1Q86U70 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
LDB1Q86U70 MIR6722-201ENST00000617286 78 ntBASIC22.47■■□□□ 1.19
LDB1Q86U70 AL035685.1-201ENST00000636663 812 ntBASIC22.47■■□□□ 1.19
LDB1Q86U70 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
LDB1Q86U70 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
LDB1Q86U70 AC079630.1-202ENST00000618127 1840 ntBASIC22.47■■□□□ 1.19
LDB1Q86U70 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC22.47■■□□□ 1.19
LDB1Q86U70 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC22.47■■□□□ 1.19
LDB1Q86U70 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC22.47■■□□□ 1.19
LDB1Q86U70 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
LDB1Q86U70 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 13.9 ms