Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC40Q4G0X9 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC40Q4G0X9 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC40Q4G0X9 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CCDC40Q4G0X9 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CCDC40Q4G0X9 TK2-202ENST00000417693 1046 ntTSL 2 BASIC24.78■■□□□ 1.56
CCDC40Q4G0X9 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC24.78■■□□□ 1.56
CCDC40Q4G0X9 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
CCDC40Q4G0X9 AC012676.1-201ENST00000574705 1949 ntBASIC24.78■■□□□ 1.56
CCDC40Q4G0X9 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CCDC40Q4G0X9 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
CCDC40Q4G0X9 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
CCDC40Q4G0X9 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC24.77■■□□□ 1.56
CCDC40Q4G0X9 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
CCDC40Q4G0X9 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
CCDC40Q4G0X9 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC24.77■■□□□ 1.56
CCDC40Q4G0X9 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
CCDC40Q4G0X9 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC24.77■■□□□ 1.56
CCDC40Q4G0X9 SNX5-217ENST00000606557 1087 ntBASIC24.77■■□□□ 1.56
CCDC40Q4G0X9 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
CCDC40Q4G0X9 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC24.77■■□□□ 1.56
CCDC40Q4G0X9 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
CCDC40Q4G0X9 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC24.76■■□□□ 1.55
CCDC40Q4G0X9 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC24.76■■□□□ 1.55
CCDC40Q4G0X9 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC24.76■■□□□ 1.55
CCDC40Q4G0X9 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC24.76■■□□□ 1.55
CCDC40Q4G0X9 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
CCDC40Q4G0X9 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC24.76■■□□□ 1.55
CCDC40Q4G0X9 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
CCDC40Q4G0X9 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC24.75■■□□□ 1.55
CCDC40Q4G0X9 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
CCDC40Q4G0X9 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
CCDC40Q4G0X9 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC24.75■■□□□ 1.55
CCDC40Q4G0X9 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
CCDC40Q4G0X9 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.55
CCDC40Q4G0X9 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC24.75■■□□□ 1.55
CCDC40Q4G0X9 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC24.75■■□□□ 1.55
CCDC40Q4G0X9 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
CCDC40Q4G0X9 DUSP8P3-201ENST00000399571 1760 ntBASIC24.75■■□□□ 1.55
CCDC40Q4G0X9 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
CCDC40Q4G0X9 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC24.74■■□□□ 1.55
CCDC40Q4G0X9 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
CCDC40Q4G0X9 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
CCDC40Q4G0X9 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC24.74■■□□□ 1.55
CCDC40Q4G0X9 SENP5-202ENST00000419026 973 ntTSL 3 BASIC24.74■■□□□ 1.55
CCDC40Q4G0X9 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC24.74■■□□□ 1.55
CCDC40Q4G0X9 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC24.74■■□□□ 1.55
CCDC40Q4G0X9 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
CCDC40Q4G0X9 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC24.74■■□□□ 1.55
CCDC40Q4G0X9 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
CCDC40Q4G0X9 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC24.74■■□□□ 1.55
CCDC40Q4G0X9 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
CCDC40Q4G0X9 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC24.74■■□□□ 1.55
CCDC40Q4G0X9 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC24.74■■□□□ 1.55
CCDC40Q4G0X9 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC24.74■■□□□ 1.55
CCDC40Q4G0X9 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
CCDC40Q4G0X9 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
CCDC40Q4G0X9 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
CCDC40Q4G0X9 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC24.73■■□□□ 1.55
CCDC40Q4G0X9 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
CCDC40Q4G0X9 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
CCDC40Q4G0X9 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC24.73■■□□□ 1.55
CCDC40Q4G0X9 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
CCDC40Q4G0X9 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC24.73■■□□□ 1.55
CCDC40Q4G0X9 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC24.73■■□□□ 1.55
CCDC40Q4G0X9 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
CCDC40Q4G0X9 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
CCDC40Q4G0X9 USF2-207ENST00000595068 1612 ntTSL 5 BASIC24.72■■□□□ 1.55
CCDC40Q4G0X9 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
CCDC40Q4G0X9 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
CCDC40Q4G0X9 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
CCDC40Q4G0X9 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC24.72■■□□□ 1.55
CCDC40Q4G0X9 BX664725.1-201ENST00000438252 379 ntBASIC24.72■■□□□ 1.55
CCDC40Q4G0X9 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC24.72■■□□□ 1.55
CCDC40Q4G0X9 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC24.72■■□□□ 1.55
CCDC40Q4G0X9 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC24.72■■□□□ 1.55
CCDC40Q4G0X9 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
CCDC40Q4G0X9 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC24.71■■□□□ 1.55
CCDC40Q4G0X9 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
CCDC40Q4G0X9 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CCDC40Q4G0X9 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
CCDC40Q4G0X9 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC24.71■■□□□ 1.55
CCDC40Q4G0X9 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
CCDC40Q4G0X9 PRTG-204ENST00000561292 833 ntTSL 3 BASIC24.71■■□□□ 1.55
CCDC40Q4G0X9 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC24.71■■□□□ 1.55
CCDC40Q4G0X9 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
CCDC40Q4G0X9 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
CCDC40Q4G0X9 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC24.7■■□□□ 1.55
CCDC40Q4G0X9 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC24.7■■□□□ 1.55
CCDC40Q4G0X9 REST-206ENST00000612429 1376 ntTSL 5 BASIC24.7■■□□□ 1.55
CCDC40Q4G0X9 REST-207ENST00000616975 1370 ntTSL 5 BASIC24.7■■□□□ 1.55
CCDC40Q4G0X9 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
CCDC40Q4G0X9 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
CCDC40Q4G0X9 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
CCDC40Q4G0X9 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
CCDC40Q4G0X9 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
CCDC40Q4G0X9 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
CCDC40Q4G0X9 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC24.7■■□□□ 1.54
CCDC40Q4G0X9 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC24.7■■□□□ 1.54
CCDC40Q4G0X9 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC24.69■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms