Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.92■□□□□ 0.94
RNF4P78317 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF4P78317 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
RNF4P78317 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF4P78317 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
RNF4P78317 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
RNF4P78317 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF4P78317 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
RNF4P78317 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
RNF4P78317 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
RNF4P78317 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.91■□□□□ 0.94
RNF4P78317 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.91■□□□□ 0.94
RNF4P78317 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
RNF4P78317 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.9■□□□□ 0.94
RNF4P78317 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.9■□□□□ 0.94
RNF4P78317 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RNF4P78317 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF4P78317 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.9■□□□□ 0.94
RNF4P78317 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.9■□□□□ 0.94
RNF4P78317 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RNF4P78317 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.9■□□□□ 0.94
RNF4P78317 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RNF4P78317 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.9■□□□□ 0.94
RNF4P78317 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF4P78317 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RNF4P78317 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RNF4P78317 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
RNF4P78317 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.89■□□□□ 0.93
RNF4P78317 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.89■□□□□ 0.93
RNF4P78317 NKILA-201ENST00000613231 537 ntTSL 4 BASIC20.89■□□□□ 0.93
RNF4P78317 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.89■□□□□ 0.93
RNF4P78317 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF4P78317 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
RNF4P78317 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF4P78317 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF4P78317 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF4P78317 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF4P78317 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RNF4P78317 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.88■□□□□ 0.93
RNF4P78317 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF4P78317 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF4P78317 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF4P78317 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF4P78317 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
RNF4P78317 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF4P78317 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RNF4P78317 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.87■□□□□ 0.93
RNF4P78317 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RNF4P78317 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF4P78317 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF4P78317 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF4P78317 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF4P78317 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RNF4P78317 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RNF4P78317 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.86■□□□□ 0.93
RNF4P78317 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF4P78317 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF4P78317 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF4P78317 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.86■□□□□ 0.93
RNF4P78317 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.86■□□□□ 0.93
RNF4P78317 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF4P78317 AC093323.1-202ENST00000635031 2045 ntBASIC20.86■□□□□ 0.93
RNF4P78317 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
RNF4P78317 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF4P78317 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.86■□□□□ 0.93
RNF4P78317 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.86■□□□□ 0.93
RNF4P78317 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF4P78317 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RNF4P78317 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.85■□□□□ 0.93
RNF4P78317 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.85■□□□□ 0.93
RNF4P78317 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.85■□□□□ 0.93
RNF4P78317 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.85■□□□□ 0.93
RNF4P78317 AC099791.2-201ENST00000605725 427 ntBASIC20.85■□□□□ 0.93
RNF4P78317 AC092171.4-201ENST00000609130 632 ntBASIC20.85■□□□□ 0.93
RNF4P78317 AC241377.3-202ENST00000626088 1088 ntBASIC20.85■□□□□ 0.93
RNF4P78317 AC241585.3-202ENST00000628937 1088 ntBASIC20.85■□□□□ 0.93
RNF4P78317 AC245100.8-202ENST00000629247 1058 ntBASIC20.85■□□□□ 0.93
RNF4P78317 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RNF4P78317 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RNF4P78317 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF4P78317 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
RNF4P78317 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.85■□□□□ 0.93
RNF4P78317 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RNF4P78317 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RNF4P78317 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RNF4P78317 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RNF4P78317 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RNF4P78317 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
RNF4P78317 AC096631.2-201ENST00000436136 790 ntBASIC20.84■□□□□ 0.93
RNF4P78317 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RNF4P78317 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
RNF4P78317 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.93
RNF4P78317 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.84■□□□□ 0.93
RNF4P78317 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
RNF4P78317 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.84■□□□□ 0.93
RNF4P78317 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
RNF4P78317 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNF4P78317 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
RNF4P78317 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RNF4P78317 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms