Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CLRN1P58418 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CLRN1P58418 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLRN1P58418 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLRN1P58418 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CLRN1P58418 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLRN1P58418 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLRN1P58418 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLRN1P58418 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
CLRN1P58418 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLRN1P58418 MIR4787-201ENST00000607364 84 ntBASIC20.12■□□□□ 0.81
CLRN1P58418 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.12■□□□□ 0.81
CLRN1P58418 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLRN1P58418 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.12■□□□□ 0.81
CLRN1P58418 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CLRN1P58418 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
CLRN1P58418 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.12■□□□□ 0.81
CLRN1P58418 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC20.12■□□□□ 0.81
CLRN1P58418 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
CLRN1P58418 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLRN1P58418 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CLRN1P58418 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLRN1P58418 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.11■□□□□ 0.81
CLRN1P58418 AC092028.1-203ENST00000608262 953 ntBASIC20.11■□□□□ 0.81
CLRN1P58418 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.11■□□□□ 0.81
CLRN1P58418 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.11■□□□□ 0.81
CLRN1P58418 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLRN1P58418 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CLRN1P58418 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLRN1P58418 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLRN1P58418 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
CLRN1P58418 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.11■□□□□ 0.81
CLRN1P58418 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.11■□□□□ 0.81
CLRN1P58418 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLRN1P58418 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
CLRN1P58418 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLRN1P58418 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CLRN1P58418 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLRN1P58418 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.1■□□□□ 0.81
CLRN1P58418 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLRN1P58418 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.1■□□□□ 0.81
CLRN1P58418 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.1■□□□□ 0.81
CLRN1P58418 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
CLRN1P58418 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.1■□□□□ 0.81
CLRN1P58418 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLRN1P58418 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLRN1P58418 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLRN1P58418 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CLRN1P58418 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLRN1P58418 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLRN1P58418 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLRN1P58418 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.09■□□□□ 0.81
CLRN1P58418 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLRN1P58418 MIR6722-201ENST00000617286 78 ntBASIC20.09■□□□□ 0.81
CLRN1P58418 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CLRN1P58418 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
CLRN1P58418 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.09■□□□□ 0.81
CLRN1P58418 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CLRN1P58418 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.09■□□□□ 0.81
CLRN1P58418 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CLRN1P58418 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CLRN1P58418 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.08■□□□□ 0.81
CLRN1P58418 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CLRN1P58418 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CLRN1P58418 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
CLRN1P58418 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CLRN1P58418 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.08■□□□□ 0.81
CLRN1P58418 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
CLRN1P58418 MTDHP2-201ENST00000601468 714 ntBASIC20.08■□□□□ 0.81
CLRN1P58418 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLRN1P58418 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
CLRN1P58418 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CLRN1P58418 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLRN1P58418 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLRN1P58418 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CLRN1P58418 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.07■□□□□ 0.8
CLRN1P58418 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLRN1P58418 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
CLRN1P58418 AC005703.6-201ENST00000623265 1329 ntBASIC20.07■□□□□ 0.8
CLRN1P58418 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLRN1P58418 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.07■□□□□ 0.8
CLRN1P58418 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
CLRN1P58418 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
CLRN1P58418 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
CLRN1P58418 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
CLRN1P58418 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC20.07■□□□□ 0.8
CLRN1P58418 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLRN1P58418 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CLRN1P58418 AC092068.2-201ENST00000590491 1708 ntBASIC20.07■□□□□ 0.8
CLRN1P58418 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLRN1P58418 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLRN1P58418 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
CLRN1P58418 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLRN1P58418 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLRN1P58418 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLRN1P58418 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CLRN1P58418 TSPY9P-201ENST00000440215 945 ntBASIC20.06■□□□□ 0.8
CLRN1P58418 TSPY11P-201ENST00000442607 1045 ntBASIC20.06■□□□□ 0.8
CLRN1P58418 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CLRN1P58418 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms