Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC23.89■■□□□ 1.41
BDNFP23560 AL136162.1-201ENST00000607711 1078 ntBASIC23.89■■□□□ 1.41
BDNFP23560 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC23.89■■□□□ 1.41
BDNFP23560 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.41
BDNFP23560 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
BDNFP23560 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC23.88■■□□□ 1.41
BDNFP23560 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
BDNFP23560 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
BDNFP23560 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
BDNFP23560 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC23.88■■□□□ 1.41
BDNFP23560 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC23.88■■□□□ 1.41
BDNFP23560 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC23.88■■□□□ 1.41
BDNFP23560 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC23.87■■□□□ 1.41
BDNFP23560 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
BDNFP23560 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC23.87■■□□□ 1.41
BDNFP23560 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC23.87■■□□□ 1.41
BDNFP23560 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
BDNFP23560 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
BDNFP23560 AC106739.1-201ENST00000617035 715 ntBASIC23.87■■□□□ 1.41
BDNFP23560 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC23.87■■□□□ 1.41
BDNFP23560 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC23.87■■□□□ 1.41
BDNFP23560 ABCB10P4-201ENST00000566803 2184 ntBASIC23.86■■□□□ 1.41
BDNFP23560 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC23.86■■□□□ 1.41
BDNFP23560 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC23.86■■□□□ 1.41
BDNFP23560 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC23.86■■□□□ 1.41
BDNFP23560 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC23.86■■□□□ 1.41
BDNFP23560 DUX4L19-201ENST00000557448 1267 ntBASIC23.86■■□□□ 1.41
BDNFP23560 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC23.86■■□□□ 1.41
BDNFP23560 AC092171.4-201ENST00000609130 632 ntBASIC23.86■■□□□ 1.41
BDNFP23560 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
BDNFP23560 SYT6-210ENST00000641643 1587 ntBASIC23.86■■□□□ 1.41
BDNFP23560 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC23.86■■□□□ 1.41
BDNFP23560 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
BDNFP23560 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
BDNFP23560 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC23.85■■□□□ 1.41
BDNFP23560 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC23.85■■□□□ 1.41
BDNFP23560 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
BDNFP23560 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC23.85■■□□□ 1.41
BDNFP23560 AC024257.2-201ENST00000549699 147 ntBASIC23.85■■□□□ 1.41
BDNFP23560 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC23.85■■□□□ 1.41
BDNFP23560 AC135279.3-201ENST00000610945 1311 ntBASIC23.84■■□□□ 1.41
BDNFP23560 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
BDNFP23560 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
BDNFP23560 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
BDNFP23560 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
BDNFP23560 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
BDNFP23560 AC006455.2-201ENST00000429931 906 ntBASIC23.84■■□□□ 1.41
BDNFP23560 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
BDNFP23560 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC23.84■■□□□ 1.41
BDNFP23560 AC005837.3-201ENST00000612163 286 ntBASIC23.84■■□□□ 1.41
BDNFP23560 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
BDNFP23560 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
BDNFP23560 VGF-203ENST00000611537 1622 ntTSL 5 BASIC23.84■■□□□ 1.41
BDNFP23560 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
BDNFP23560 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC23.83■■□□□ 1.41
BDNFP23560 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
BDNFP23560 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC23.83■■□□□ 1.41
BDNFP23560 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
BDNFP23560 SERBP1P1-201ENST00000396021 1160 ntBASIC23.83■■□□□ 1.41
BDNFP23560 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC23.83■■□□□ 1.41
BDNFP23560 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC23.83■■□□□ 1.41
BDNFP23560 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
BDNFP23560 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC23.83■■□□□ 1.41
BDNFP23560 AC241377.3-202ENST00000626088 1088 ntBASIC23.83■■□□□ 1.41
BDNFP23560 AC241585.3-202ENST00000628937 1088 ntBASIC23.83■■□□□ 1.41
BDNFP23560 AC245100.8-202ENST00000629247 1058 ntBASIC23.83■■□□□ 1.41
BDNFP23560 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
BDNFP23560 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
BDNFP23560 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC23.83■■□□□ 1.41
BDNFP23560 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
BDNFP23560 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
BDNFP23560 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC23.83■■□□□ 1.4
BDNFP23560 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC23.83■■□□□ 1.4
BDNFP23560 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
BDNFP23560 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.4
BDNFP23560 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
BDNFP23560 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
BDNFP23560 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
BDNFP23560 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
BDNFP23560 AC133561.4-201ENST00000566112 224 ntBASIC23.82■■□□□ 1.4
BDNFP23560 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC23.82■■□□□ 1.4
BDNFP23560 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
BDNFP23560 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
BDNFP23560 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
BDNFP23560 PTCHD3P2-201ENST00000424937 1205 ntBASIC23.81■■□□□ 1.4
BDNFP23560 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC23.81■■□□□ 1.4
BDNFP23560 SF1-220ENST00000626028 704 ntTSL 2 BASIC23.81■■□□□ 1.4
BDNFP23560 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
BDNFP23560 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
BDNFP23560 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
BDNFP23560 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC23.8■■□□□ 1.4
BDNFP23560 ASB1-202ENST00000409297 878 ntTSL 5 BASIC23.8■■□□□ 1.4
BDNFP23560 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC23.8■■□□□ 1.4
BDNFP23560 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC23.8■■□□□ 1.4
BDNFP23560 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC23.8■■□□□ 1.4
BDNFP23560 AC009086.3-201ENST00000623486 1008 ntBASIC23.8■■□□□ 1.4
BDNFP23560 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
BDNFP23560 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
BDNFP23560 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC23.8■■□□□ 1.4
BDNFP23560 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC23.8■■□□□ 1.4
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms