Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 SLC6A10P-202ENST00000431994 2058 ntBASIC19.05■□□□□ 0.64
USF1P22415 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USF1P22415 AP003733.4-201ENST00000623785 1697 ntBASIC19.05■□□□□ 0.64
USF1P22415 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
USF1P22415 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USF1P22415 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC19.05■□□□□ 0.64
USF1P22415 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.05■□□□□ 0.64
USF1P22415 AC027682.1-201ENST00000562846 899 ntBASIC19.05■□□□□ 0.64
USF1P22415 AC011298.3-201ENST00000615796 283 ntBASIC19.05■□□□□ 0.64
USF1P22415 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
USF1P22415 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
USF1P22415 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
USF1P22415 AC009102.2-201ENST00000606772 1639 ntBASIC19.04■□□□□ 0.64
USF1P22415 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
USF1P22415 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USF1P22415 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USF1P22415 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
USF1P22415 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
USF1P22415 CA15P2-201ENST00000611168 834 ntBASIC19.04■□□□□ 0.64
USF1P22415 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USF1P22415 AC241377.3-202ENST00000626088 1088 ntBASIC19.04■□□□□ 0.64
USF1P22415 AC241585.3-202ENST00000628937 1088 ntBASIC19.04■□□□□ 0.64
USF1P22415 AC245100.8-202ENST00000629247 1058 ntBASIC19.04■□□□□ 0.64
USF1P22415 AC093323.1-202ENST00000635031 2045 ntBASIC19.04■□□□□ 0.64
USF1P22415 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC19.04■□□□□ 0.64
USF1P22415 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
USF1P22415 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USF1P22415 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USF1P22415 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USF1P22415 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USF1P22415 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.03■□□□□ 0.64
USF1P22415 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USF1P22415 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC19.03■□□□□ 0.64
USF1P22415 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.03■□□□□ 0.64
USF1P22415 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.03■□□□□ 0.64
USF1P22415 MIR6089-201ENST00000616698 64 ntBASIC19.03■□□□□ 0.64
USF1P22415 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.03■□□□□ 0.64
USF1P22415 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USF1P22415 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USF1P22415 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USF1P22415 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
USF1P22415 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USF1P22415 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC19.02■□□□□ 0.64
USF1P22415 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC19.02■□□□□ 0.64
USF1P22415 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC19.02■□□□□ 0.64
USF1P22415 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.02■□□□□ 0.64
USF1P22415 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.02■□□□□ 0.64
USF1P22415 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.02■□□□□ 0.64
USF1P22415 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USF1P22415 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
USF1P22415 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
USF1P22415 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USF1P22415 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
USF1P22415 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
USF1P22415 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
USF1P22415 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USF1P22415 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USF1P22415 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.01■□□□□ 0.63
USF1P22415 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USF1P22415 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC19.01■□□□□ 0.63
USF1P22415 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
USF1P22415 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.01■□□□□ 0.63
USF1P22415 AC008764.7-201ENST00000593779 1081 ntBASIC19.01■□□□□ 0.63
USF1P22415 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
USF1P22415 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USF1P22415 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USF1P22415 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC19.01■□□□□ 0.63
USF1P22415 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USF1P22415 AL139125.2-201ENST00000623134 1869 ntBASIC19.01■□□□□ 0.63
USF1P22415 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
USF1P22415 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
USF1P22415 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
USF1P22415 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
USF1P22415 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USF1P22415 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USF1P22415 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USF1P22415 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19■□□□□ 0.63
USF1P22415 MIR6821-201ENST00000617625 74 ntBASIC19■□□□□ 0.63
USF1P22415 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC19■□□□□ 0.63
USF1P22415 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC19■□□□□ 0.63
USF1P22415 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
USF1P22415 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USF1P22415 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
USF1P22415 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USF1P22415 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
USF1P22415 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC18.99■□□□□ 0.63
USF1P22415 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USF1P22415 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
USF1P22415 PARL-206ENST00000435888 1098 ntTSL 5 BASIC18.99■□□□□ 0.63
USF1P22415 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC18.99■□□□□ 0.63
USF1P22415 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
USF1P22415 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
USF1P22415 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
USF1P22415 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC18.98■□□□□ 0.63
USF1P22415 EED-207ENST00000528180 1745 ntTSL 5 BASIC18.98■□□□□ 0.63
USF1P22415 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
USF1P22415 HES6-206ENST00000409574 738 ntTSL 2 BASIC18.98■□□□□ 0.63
USF1P22415 AC097381.1-201ENST00000429019 1296 ntBASIC18.98■□□□□ 0.63
USF1P22415 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.98■□□□□ 0.63
USF1P22415 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms