Protein–RNA interactions for Protein: P0CW20

LIMS4, LIM and senescent cell antigen-like-containing domain protein 4, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4P0CW20 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LIMS4P0CW20 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
LIMS4P0CW20 HES4-202ENST00000428771 1040 ntTSL 2 BASIC20.12■□□□□ 0.81
LIMS4P0CW20 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.12■□□□□ 0.81
LIMS4P0CW20 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LIMS4P0CW20 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
LIMS4P0CW20 ESRRAP2-201ENST00000418437 1549 ntBASIC20.12■□□□□ 0.81
LIMS4P0CW20 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.11■□□□□ 0.81
LIMS4P0CW20 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIMS4P0CW20 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.11■□□□□ 0.81
LIMS4P0CW20 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIMS4P0CW20 ALDH1A3-203ENST00000557963 1670 ntBASIC20.11■□□□□ 0.81
LIMS4P0CW20 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIMS4P0CW20 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIMS4P0CW20 AC133552.2-201ENST00000619106 1032 ntBASIC20.11■□□□□ 0.81
LIMS4P0CW20 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIMS4P0CW20 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIMS4P0CW20 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.11■□□□□ 0.81
LIMS4P0CW20 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIMS4P0CW20 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
LIMS4P0CW20 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.11■□□□□ 0.81
LIMS4P0CW20 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LIMS4P0CW20 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LIMS4P0CW20 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
LIMS4P0CW20 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
LIMS4P0CW20 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.1■□□□□ 0.81
LIMS4P0CW20 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LIMS4P0CW20 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
LIMS4P0CW20 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.1■□□□□ 0.81
LIMS4P0CW20 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.1■□□□□ 0.81
LIMS4P0CW20 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIMS4P0CW20 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIMS4P0CW20 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC20.09■□□□□ 0.81
LIMS4P0CW20 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIMS4P0CW20 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.09■□□□□ 0.81
LIMS4P0CW20 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIMS4P0CW20 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIMS4P0CW20 AC131274.2-201ENST00000580697 1507 ntBASIC20.08■□□□□ 0.81
LIMS4P0CW20 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIMS4P0CW20 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LIMS4P0CW20 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LIMS4P0CW20 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
LIMS4P0CW20 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.08■□□□□ 0.8
LIMS4P0CW20 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
LIMS4P0CW20 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
LIMS4P0CW20 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LIMS4P0CW20 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMS4P0CW20 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMS4P0CW20 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
LIMS4P0CW20 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.07■□□□□ 0.8
LIMS4P0CW20 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMS4P0CW20 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMS4P0CW20 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
LIMS4P0CW20 AC087393.1-201ENST00000582896 145 ntBASIC20.07■□□□□ 0.8
LIMS4P0CW20 MIR7108-201ENST00000614319 87 ntBASIC20.07■□□□□ 0.8
LIMS4P0CW20 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.07■□□□□ 0.8
LIMS4P0CW20 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.07■□□□□ 0.8
LIMS4P0CW20 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMS4P0CW20 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMS4P0CW20 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.07■□□□□ 0.8
LIMS4P0CW20 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LIMS4P0CW20 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.07■□□□□ 0.8
LIMS4P0CW20 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.06■□□□□ 0.8
LIMS4P0CW20 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
LIMS4P0CW20 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
LIMS4P0CW20 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
LIMS4P0CW20 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
LIMS4P0CW20 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMS4P0CW20 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMS4P0CW20 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIMS4P0CW20 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.06■□□□□ 0.8
LIMS4P0CW20 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIMS4P0CW20 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIMS4P0CW20 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMS4P0CW20 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIMS4P0CW20 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMS4P0CW20 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMS4P0CW20 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIMS4P0CW20 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
LIMS4P0CW20 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMS4P0CW20 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMS4P0CW20 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.05■□□□□ 0.8
LIMS4P0CW20 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMS4P0CW20 GPX1-201ENST00000419349 1106 ntBASIC20.05■□□□□ 0.8
LIMS4P0CW20 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.05■□□□□ 0.8
LIMS4P0CW20 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.05■□□□□ 0.8
LIMS4P0CW20 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMS4P0CW20 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LIMS4P0CW20 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMS4P0CW20 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMS4P0CW20 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.05■□□□□ 0.8
LIMS4P0CW20 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMS4P0CW20 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMS4P0CW20 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMS4P0CW20 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMS4P0CW20 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
LIMS4P0CW20 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LIMS4P0CW20 SPCS2P3-201ENST00000500401 656 ntBASIC20.04■□□□□ 0.8
LIMS4P0CW20 AC018755.3-202ENST00000596210 929 ntBASIC20.04■□□□□ 0.8
LIMS4P0CW20 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms