Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LIMS3P0CW19 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
LIMS3P0CW19 HES4-202ENST00000428771 1040 ntTSL 2 BASIC20.12■□□□□ 0.81
LIMS3P0CW19 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.12■□□□□ 0.81
LIMS3P0CW19 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
LIMS3P0CW19 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
LIMS3P0CW19 ESRRAP2-201ENST00000418437 1549 ntBASIC20.12■□□□□ 0.81
LIMS3P0CW19 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.11■□□□□ 0.81
LIMS3P0CW19 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIMS3P0CW19 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.11■□□□□ 0.81
LIMS3P0CW19 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIMS3P0CW19 ALDH1A3-203ENST00000557963 1670 ntBASIC20.11■□□□□ 0.81
LIMS3P0CW19 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIMS3P0CW19 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIMS3P0CW19 AC133552.2-201ENST00000619106 1032 ntBASIC20.11■□□□□ 0.81
LIMS3P0CW19 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIMS3P0CW19 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIMS3P0CW19 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.11■□□□□ 0.81
LIMS3P0CW19 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
LIMS3P0CW19 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
LIMS3P0CW19 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.11■□□□□ 0.81
LIMS3P0CW19 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LIMS3P0CW19 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
LIMS3P0CW19 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
LIMS3P0CW19 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
LIMS3P0CW19 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.1■□□□□ 0.81
LIMS3P0CW19 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
LIMS3P0CW19 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
LIMS3P0CW19 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.1■□□□□ 0.81
LIMS3P0CW19 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.1■□□□□ 0.81
LIMS3P0CW19 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIMS3P0CW19 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIMS3P0CW19 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC20.09■□□□□ 0.81
LIMS3P0CW19 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
LIMS3P0CW19 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.09■□□□□ 0.81
LIMS3P0CW19 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIMS3P0CW19 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIMS3P0CW19 AC131274.2-201ENST00000580697 1507 ntBASIC20.08■□□□□ 0.81
LIMS3P0CW19 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
LIMS3P0CW19 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
LIMS3P0CW19 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LIMS3P0CW19 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
LIMS3P0CW19 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.08■□□□□ 0.8
LIMS3P0CW19 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
LIMS3P0CW19 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
LIMS3P0CW19 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
LIMS3P0CW19 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMS3P0CW19 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMS3P0CW19 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
LIMS3P0CW19 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.07■□□□□ 0.8
LIMS3P0CW19 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMS3P0CW19 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMS3P0CW19 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
LIMS3P0CW19 AC087393.1-201ENST00000582896 145 ntBASIC20.07■□□□□ 0.8
LIMS3P0CW19 MIR7108-201ENST00000614319 87 ntBASIC20.07■□□□□ 0.8
LIMS3P0CW19 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.07■□□□□ 0.8
LIMS3P0CW19 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.07■□□□□ 0.8
LIMS3P0CW19 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMS3P0CW19 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
LIMS3P0CW19 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.07■□□□□ 0.8
LIMS3P0CW19 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
LIMS3P0CW19 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC20.07■□□□□ 0.8
LIMS3P0CW19 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.06■□□□□ 0.8
LIMS3P0CW19 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
LIMS3P0CW19 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
LIMS3P0CW19 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
LIMS3P0CW19 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
LIMS3P0CW19 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMS3P0CW19 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMS3P0CW19 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIMS3P0CW19 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.06■□□□□ 0.8
LIMS3P0CW19 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIMS3P0CW19 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIMS3P0CW19 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMS3P0CW19 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIMS3P0CW19 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMS3P0CW19 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
LIMS3P0CW19 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
LIMS3P0CW19 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
LIMS3P0CW19 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMS3P0CW19 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMS3P0CW19 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.05■□□□□ 0.8
LIMS3P0CW19 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMS3P0CW19 GPX1-201ENST00000419349 1106 ntBASIC20.05■□□□□ 0.8
LIMS3P0CW19 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC20.05■□□□□ 0.8
LIMS3P0CW19 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.05■□□□□ 0.8
LIMS3P0CW19 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMS3P0CW19 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
LIMS3P0CW19 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMS3P0CW19 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
LIMS3P0CW19 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.05■□□□□ 0.8
LIMS3P0CW19 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMS3P0CW19 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMS3P0CW19 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMS3P0CW19 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
LIMS3P0CW19 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
LIMS3P0CW19 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
LIMS3P0CW19 SPCS2P3-201ENST00000500401 656 ntBASIC20.04■□□□□ 0.8
LIMS3P0CW19 AC018755.3-202ENST00000596210 929 ntBASIC20.04■□□□□ 0.8
LIMS3P0CW19 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms