Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
COL1A1P02452 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC27.52■■■□□ 2
COL1A1P02452 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC27.52■■■□□ 2
COL1A1P02452 PARL-206ENST00000435888 1098 ntTSL 5 BASIC27.52■■■□□ 2
COL1A1P02452 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC27.52■■■□□ 2
COL1A1P02452 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC27.51■■■□□ 2
COL1A1P02452 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■■□□ 2
COL1A1P02452 AL138724.1-201ENST00000606771 1088 ntBASIC27.51■■■□□ 2
COL1A1P02452 VGF-203ENST00000611537 1622 ntTSL 5 BASIC27.51■■□□□ 1.99
COL1A1P02452 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
COL1A1P02452 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC27.51■■□□□ 1.99
COL1A1P02452 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC27.51■■□□□ 1.99
COL1A1P02452 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC27.51■■□□□ 1.99
COL1A1P02452 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC27.5■■□□□ 1.99
COL1A1P02452 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC27.5■■□□□ 1.99
COL1A1P02452 EED-207ENST00000528180 1745 ntTSL 5 BASIC27.5■■□□□ 1.99
COL1A1P02452 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
COL1A1P02452 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC27.5■■□□□ 1.99
COL1A1P02452 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC27.5■■□□□ 1.99
COL1A1P02452 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC27.5■■□□□ 1.99
COL1A1P02452 PLD4-205ENST00000553861 667 ntTSL 2 BASIC27.5■■□□□ 1.99
COL1A1P02452 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC27.5■■□□□ 1.99
COL1A1P02452 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
COL1A1P02452 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC27.49■■□□□ 1.99
COL1A1P02452 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC27.49■■□□□ 1.99
COL1A1P02452 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC27.49■■□□□ 1.99
COL1A1P02452 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC27.49■■□□□ 1.99
COL1A1P02452 AC009086.3-201ENST00000623486 1008 ntBASIC27.49■■□□□ 1.99
COL1A1P02452 EI24-213ENST00000618552 1747 ntTSL 5 BASIC27.49■■□□□ 1.99
COL1A1P02452 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
COL1A1P02452 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
COL1A1P02452 STOX2-205ENST00000513034 807 ntTSL 3 BASIC27.48■■□□□ 1.99
COL1A1P02452 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC27.48■■□□□ 1.99
COL1A1P02452 MAG-206ENST00000597035 542 ntTSL 4 BASIC27.48■■□□□ 1.99
COL1A1P02452 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC27.48■■□□□ 1.99
COL1A1P02452 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC27.48■■□□□ 1.99
COL1A1P02452 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC27.48■■□□□ 1.99
COL1A1P02452 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC27.47■■□□□ 1.99
COL1A1P02452 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC27.47■■□□□ 1.99
COL1A1P02452 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
COL1A1P02452 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
COL1A1P02452 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC27.47■■□□□ 1.99
COL1A1P02452 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC27.46■■□□□ 1.99
COL1A1P02452 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC27.46■■□□□ 1.99
COL1A1P02452 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
COL1A1P02452 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC27.46■■□□□ 1.99
COL1A1P02452 AC087623.3-201ENST00000607047 1098 ntBASIC27.46■■□□□ 1.99
COL1A1P02452 AC136469.2-201ENST00000623944 1028 ntBASIC27.46■■□□□ 1.99
COL1A1P02452 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC27.46■■□□□ 1.99
COL1A1P02452 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC27.46■■□□□ 1.99
COL1A1P02452 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
COL1A1P02452 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC27.46■■□□□ 1.99
COL1A1P02452 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC27.46■■□□□ 1.99
COL1A1P02452 AL162430.1-201ENST00000480705 870 ntBASIC27.45■■□□□ 1.99
COL1A1P02452 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC27.45■■□□□ 1.99
COL1A1P02452 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC27.45■■□□□ 1.99
COL1A1P02452 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC27.45■■□□□ 1.98
COL1A1P02452 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC27.44■■□□□ 1.98
COL1A1P02452 AC241377.3-202ENST00000626088 1088 ntBASIC27.44■■□□□ 1.98
COL1A1P02452 AC241585.3-202ENST00000628937 1088 ntBASIC27.44■■□□□ 1.98
COL1A1P02452 AC245100.8-202ENST00000629247 1058 ntBASIC27.44■■□□□ 1.98
COL1A1P02452 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC27.44■■□□□ 1.98
COL1A1P02452 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC27.44■■□□□ 1.98
COL1A1P02452 GTSE1-AS1-202ENST00000623117 1518 ntBASIC27.44■■□□□ 1.98
COL1A1P02452 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
COL1A1P02452 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC27.44■■□□□ 1.98
COL1A1P02452 MIR3181-201ENST00000578512 73 ntBASIC27.44■■□□□ 1.98
COL1A1P02452 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC27.44■■□□□ 1.98
COL1A1P02452 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
COL1A1P02452 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC27.43■■□□□ 1.98
COL1A1P02452 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
COL1A1P02452 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
COL1A1P02452 ASB1-202ENST00000409297 878 ntTSL 5 BASIC27.43■■□□□ 1.98
COL1A1P02452 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
COL1A1P02452 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
COL1A1P02452 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
COL1A1P02452 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC27.42■■□□□ 1.98
COL1A1P02452 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC27.42■■□□□ 1.98
COL1A1P02452 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC27.42■■□□□ 1.98
COL1A1P02452 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC27.41■■□□□ 1.98
COL1A1P02452 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC27.41■■□□□ 1.98
COL1A1P02452 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC27.41■■□□□ 1.98
COL1A1P02452 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC27.41■■□□□ 1.98
COL1A1P02452 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC27.41■■□□□ 1.98
COL1A1P02452 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC27.41■■□□□ 1.98
COL1A1P02452 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC27.41■■□□□ 1.98
COL1A1P02452 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC27.41■■□□□ 1.98
COL1A1P02452 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC27.41■■□□□ 1.98
COL1A1P02452 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC27.41■■□□□ 1.98
COL1A1P02452 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
COL1A1P02452 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
COL1A1P02452 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
COL1A1P02452 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
COL1A1P02452 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC27.4■■□□□ 1.98
COL1A1P02452 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
COL1A1P02452 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
COL1A1P02452 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC27.4■■□□□ 1.98
COL1A1P02452 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
COL1A1P02452 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC27.39■■□□□ 1.98
COL1A1P02452 HES6-206ENST00000409574 738 ntTSL 2 BASIC27.39■■□□□ 1.98
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms