Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 MED15-214ENST00000441501 840 ntTSL 315.19■□□□□ 0.022e-12■■■■□ 23.1
SMNDC1O75940 MED15-224ENST00000476767 590 ntTSL 414.72□□□□□ -0.052e-12■■■■□ 23.1
SMNDC1O75940 MED15-208ENST00000424287 589 ntTSL 414.72□□□□□ -0.052e-12■■■■□ 23.1
SMNDC1O75940 MED15-219ENST00000457322 623 ntTSL 414.42□□□□□ -0.12e-12■■■■□ 23.1
SMNDC1O75940 MED15-228ENST00000487550 587 ntTSL 314.03□□□□□ -0.162e-12■■■■□ 23.1
SMNDC1O75940 MED15-209ENST00000428629 572 ntTSL 48.08□□□□□ -1.122e-12■■■■□ 23.1
SMNDC1O75940 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.16□□□□□ -1.581e-7■■■■□ 23.1
SMNDC1O75940 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.611e-7■■■■□ 23.1
SMNDC1O75940 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.7□□□□□ -1.821e-7■■■■□ 23.1
SMNDC1O75940 GLI4-206ENST00000520021 361 ntTSL 310.36□□□□□ -0.752e-6■■■■□ 23.1
SMNDC1O75940 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.021e-6■■■■□ 23
SMNDC1O75940 SNORD118-201ENST00000363593 134 ntBASIC0.97□□□□□ -2.259e-53■■■■□ 23
SMNDC1O75940 GCN1-207ENST00000550471 918 ntTSL 317.95■□□□□ 0.466e-14■■■■□ 22.9
SMNDC1O75940 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.251e-9■■■■□ 22.9
SMNDC1O75940 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC16.18■□□□□ 0.181e-9■■■■□ 22.9
SMNDC1O75940 NEU4-213ENST00000435934 451 ntTSL 415.2■□□□□ 0.022e-6■■■■□ 22.9
SMNDC1O75940 ACIN1-202ENST00000338631 2445 ntTSL 1 (best) BASIC14.81□□□□□ -0.041e-9■■■■□ 22.9
SMNDC1O75940 ACIN1-204ENST00000397341 2738 ntTSL 1 (best) BASIC14.64□□□□□ -0.071e-9■■■■□ 22.9
SMNDC1O75940 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.11e-9■■■■□ 22.9
SMNDC1O75940 ACIN1-222ENST00000557515 2751 ntTSL 5 BASIC13.56□□□□□ -0.241e-9■■■■□ 22.9
SMNDC1O75940 ORC2-202ENST00000410039 546 ntTSL 513.08□□□□□ -0.321e-9■■■■□ 22.9
SMNDC1O75940 ACIN1-219ENST00000556052 746 ntTSL 212.97□□□□□ -0.331e-9■■■■□ 22.9
SMNDC1O75940 ACIN1-216ENST00000555478 1017 ntTSL 512.42□□□□□ -0.421e-9■■■■□ 22.9
SMNDC1O75940 ACIN1-213ENST00000555053 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.461e-9■■■■□ 22.9
SMNDC1O75940 ACIN1-223ENST00000605057 4474 ntTSL 1 (best) BASIC11.74□□□□□ -0.531e-9■■■■□ 22.9
SMNDC1O75940 GCN1-201ENST00000300648 8675 ntAPPRIS P1 TSL 1 (best) BASIC11.44□□□□□ -0.586e-14■■■■□ 22.9
SMNDC1O75940 ACIN1-206ENST00000473758 3540 ntTSL 1 (best)11.15□□□□□ -0.621e-9■■■■□ 22.9
SMNDC1O75940 ACIN1-217ENST00000555566 734 ntTSL 310.67□□□□□ -0.71e-9■■■■□ 22.9
SMNDC1O75940 ACIN1-209ENST00000553790 756 ntTSL 210.48□□□□□ -0.731e-9■■■■□ 22.9
SMNDC1O75940 ACIN1-210ENST00000554680 888 ntTSL 29.13□□□□□ -0.951e-9■■■■□ 22.9
SMNDC1O75940 ACIN1-218ENST00000555807 928 ntTSL 28.79□□□□□ -11e-9■■■■□ 22.9
SMNDC1O75940 ACIN1-220ENST00000557039 727 ntTSL 38.6□□□□□ -1.031e-9■■■■□ 22.9
SMNDC1O75940 ORC2-205ENST00000467605 568 ntTSL 38.57□□□□□ -1.041e-9■■■■□ 22.9
SMNDC1O75940 ORC2-203ENST00000457595 486 ntTSL 27.55□□□□□ -1.21e-9■■■■□ 22.9
SMNDC1O75940 CBFA2T3-203ENST00000562719 539 ntTSL 510.86□□□□□ -0.671e-6■■■■□ 22.9
SMNDC1O75940 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.051e-6■■■■□ 22.9
SMNDC1O75940 CBFA2T3-210ENST00000569464 1327 ntTSL 1 (best)12.39□□□□□ -0.431e-6■■■■□ 22.9
SMNDC1O75940 CBFA2T3-209ENST00000569443 469 ntTSL 511.41□□□□□ -0.581e-6■■■■□ 22.9
SMNDC1O75940 ULK1-202ENST00000537421 959 ntTSL 311.19□□□□□ -0.629e-8■■■■□ 22.9
SMNDC1O75940 TAF1D-213ENST00000529900 1066 ntTSL 28.53□□□□□ -1.043e-12■■■■□ 22.9
SMNDC1O75940 CAPN15-205ENST00000567216 3174 ntTSL 1 (best)20.55■□□□□ 0.882e-6■■■■□ 22.9
SMNDC1O75940 SNORD99-201ENST00000408612 74 ntBASIC1.3□□□□□ -2.21e-79■■■■□ 22.9
SMNDC1O75940 CBFA2T3-207ENST00000564416 399 ntTSL 513.78□□□□□ -0.21e-6■■■■□ 22.8
SMNDC1O75940 CAPN15-208ENST00000637507 1482 ntTSL 519.69■□□□□ 0.743e-7■■■■□ 22.8
SMNDC1O75940 SLC16A3-209ENST00000580098 859 ntTSL 217.65■□□□□ 0.422e-6■■■■□ 22.8
SMNDC1O75940 SFSWAP-204ENST00000535399 778 ntTSL 220.26■□□□□ 0.831e-14■■■■□ 22.7
SMNDC1O75940 SFSWAP-207ENST00000538548 2636 ntTSL 520.2■□□□□ 0.821e-14■■■■□ 22.7
SMNDC1O75940 SFSWAP-203ENST00000535236 5593 ntTSL 1 (best)18.55■□□□□ 0.561e-14■■■■□ 22.7
SMNDC1O75940 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.021e-14■■■■□ 22.7
SMNDC1O75940 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.011e-14■■■■□ 22.7
SMNDC1O75940 SFSWAP-209ENST00000540469 3536 ntTSL 313.9□□□□□ -0.181e-14■■■■□ 22.7
SMNDC1O75940 SNORD45A-201ENST00000384512 84 ntBASIC1.43□□□□□ -2.186e-84■■■■□ 22.7
SMNDC1O75940 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.675e-6■■■■□ 22.7
SMNDC1O75940 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC28.35■■■□□ 2.135e-6■■■■□ 22.7
SMNDC1O75940 SH3D21-202ENST00000474766 2043 ntTSL 1 (best)22.59■■□□□ 1.215e-6■■■■□ 22.7
SMNDC1O75940 RHOT2-204ENST00000561983 1044 ntTSL 522.08■■□□□ 1.135e-6■■■■□ 22.7
SMNDC1O75940 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.115e-6■■■■□ 22.7
SMNDC1O75940 RHOT2-209ENST00000563134 736 ntTSL 221.51■■□□□ 1.035e-6■■■■□ 22.7
SMNDC1O75940 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.995e-6■■■■□ 22.7
SMNDC1O75940 RHOT2-214ENST00000566214 683 ntTSL 520.81■□□□□ 0.925e-6■■■■□ 22.7
SMNDC1O75940 RHOT2-216ENST00000567017 1094 ntTSL 520.59■□□□□ 0.895e-6■■■■□ 22.7
SMNDC1O75940 EP400-202ENST00000332482 2588 ntTSL 1 (best)20.35■□□□□ 0.855e-6■■■■□ 22.7
SMNDC1O75940 RHOT2-219ENST00000568950 1343 ntTSL 520.11■□□□□ 0.815e-6■■■■□ 22.7
SMNDC1O75940 SLC29A2-204ENST00000541567 2272 ntTSL 1 (best)19.36■□□□□ 0.695e-6■■■■□ 22.7
SMNDC1O75940 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.31■□□□□ 0.685e-6■■■■□ 22.7
SMNDC1O75940 EME2-201ENST00000561564 480 ntTSL 318.79■□□□□ 0.65e-6■■■■□ 22.7
SMNDC1O75940 RHOT2-226ENST00000570280 708 ntTSL 318.68■□□□□ 0.585e-6■■■■□ 22.7
SMNDC1O75940 SLC19A1-210ENST00000486303 708 ntTSL 218.27■□□□□ 0.525e-6■■■■□ 22.7
SMNDC1O75940 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.475e-6■■■■□ 22.7
SMNDC1O75940 RHOT2-217ENST00000567589 550 ntTSL 317.99■□□□□ 0.475e-6■■■■□ 22.7
SMNDC1O75940 SH3D21-203ENST00000480549 3182 ntTSL 217.81■□□□□ 0.445e-6■■■■□ 22.7
SMNDC1O75940 RHOT2-205ENST00000562333 1052 ntTSL 517.78■□□□□ 0.445e-6■■■■□ 22.7
SMNDC1O75940 RHOT2-210ENST00000563637 993 ntTSL 517.72■□□□□ 0.435e-6■■■■□ 22.7
SMNDC1O75940 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.415e-6■■■■□ 22.7
SMNDC1O75940 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.57■□□□□ 0.45e-6■■■■□ 22.7
SMNDC1O75940 BAHCC1-204ENST00000583828 591 ntTSL 317.1■□□□□ 0.332e-11■■■■□ 22.7
SMNDC1O75940 FAM207A-204ENST00000479127 759 ntTSL 317.1■□□□□ 0.335e-6■■■■□ 22.7
SMNDC1O75940 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.92■□□□□ 0.35e-6■■■■□ 22.7
SMNDC1O75940 SLC29A2-203ENST00000540386 2474 ntTSL 1 (best)16.77■□□□□ 0.275e-6■■■■□ 22.7
SMNDC1O75940 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.255e-6■■■■□ 22.7
SMNDC1O75940 HGS-206ENST00000571647 2401 nt16.59■□□□□ 0.255e-6■■■■□ 22.7
SMNDC1O75940 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.245e-6■■■■□ 22.7
SMNDC1O75940 EME2-204ENST00000565326 434 ntTSL 216.56■□□□□ 0.245e-6■■■■□ 22.7
SMNDC1O75940 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.246e-6■■■■□ 22.7
SMNDC1O75940 RHOT2-211ENST00000563776 923 ntTSL 316.4■□□□□ 0.225e-6■■■■□ 22.7
SMNDC1O75940 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC16.21■□□□□ 0.195e-6■■■■□ 22.7
SMNDC1O75940 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.175e-6■■■■□ 22.7
SMNDC1O75940 HGS-207ENST00000571885 350 ntTSL 316.09■□□□□ 0.175e-6■■■■□ 22.7
SMNDC1O75940 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC15.68■□□□□ 0.15e-6■■■■□ 22.7
SMNDC1O75940 RHOT2-215ENST00000566965 879 ntTSL 515.53■□□□□ 0.085e-6■■■■□ 22.7
SMNDC1O75940 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC14.77□□□□□ -0.055e-6■■■■□ 22.7
SMNDC1O75940 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC14.43□□□□□ -0.15e-6■■■■□ 22.7
SMNDC1O75940 HNRNPL-213ENST00000601664 447 ntTSL 1 (best)13.77□□□□□ -0.212e-11■■■■□ 22.7
SMNDC1O75940 RHOT2-224ENST00000569943 635 ntTSL 313.71□□□□□ -0.215e-6■■■■□ 22.7
SMNDC1O75940 MICALL2-210ENST00000482839 852 ntTSL 213.71□□□□□ -0.215e-6■■■■□ 22.7
SMNDC1O75940 C2orf48-202ENST00000619640 480 ntTSL 1 (best)13.57□□□□□ -0.245e-6■■■■□ 22.7
SMNDC1O75940 APEH-201ENST00000296456 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.275e-6■■■■□ 22.7
SMNDC1O75940 MICALL2-213ENST00000490608 631 ntTSL 213.31□□□□□ -0.285e-6■■■■□ 22.7
SMNDC1O75940 BAHCC1-201ENST00000307745 10342 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.322e-11■■■■□ 22.7
SMNDC1O75940 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.395e-6■■■■□ 22.7
Retrieved 100 of 11,362 protein–RNA pairs in 338.7 ms