Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SSX4O60224 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SSX4O60224 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.33■□□□□ 0.84
SSX4O60224 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SSX4O60224 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SSX4O60224 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
SSX4O60224 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
SSX4O60224 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SSX4O60224 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC20.32■□□□□ 0.84
SSX4O60224 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SSX4O60224 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SSX4O60224 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SSX4O60224 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
SSX4O60224 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC20.31■□□□□ 0.84
SSX4O60224 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.31■□□□□ 0.84
SSX4O60224 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
SSX4O60224 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC20.31■□□□□ 0.84
SSX4O60224 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SSX4O60224 KRT125P-201ENST00000546827 989 ntBASIC20.31■□□□□ 0.84
SSX4O60224 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.31■□□□□ 0.84
SSX4O60224 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC20.31■□□□□ 0.84
SSX4O60224 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
SSX4O60224 AL137060.1-201ENST00000618151 2648 ntBASIC20.31■□□□□ 0.84
SSX4O60224 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
SSX4O60224 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SSX4O60224 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SSX4O60224 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SSX4O60224 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.3■□□□□ 0.84
SSX4O60224 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SSX4O60224 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SSX4O60224 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.3■□□□□ 0.84
SSX4O60224 AC022616.5-201ENST00000518796 181 ntBASIC20.3■□□□□ 0.84
SSX4O60224 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SSX4O60224 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.3■□□□□ 0.84
SSX4O60224 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SSX4O60224 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.3■□□□□ 0.84
SSX4O60224 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SSX4O60224 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
SSX4O60224 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
SSX4O60224 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SSX4O60224 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SSX4O60224 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SSX4O60224 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
SSX4O60224 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SSX4O60224 BX664725.1-201ENST00000438252 379 ntBASIC20.29■□□□□ 0.84
SSX4O60224 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.29■□□□□ 0.84
SSX4O60224 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.29■□□□□ 0.84
SSX4O60224 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
SSX4O60224 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SSX4O60224 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
SSX4O60224 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SSX4O60224 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SSX4O60224 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC20.28■□□□□ 0.84
SSX4O60224 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
SSX4O60224 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.28■□□□□ 0.84
SSX4O60224 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.28■□□□□ 0.84
SSX4O60224 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SSX4O60224 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SSX4O60224 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
SSX4O60224 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SSX4O60224 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.27■□□□□ 0.84
SSX4O60224 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
SSX4O60224 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SSX4O60224 LINC00526-201ENST00000581067 1875 ntBASIC20.27■□□□□ 0.84
SSX4O60224 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SSX4O60224 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.27■□□□□ 0.84
SSX4O60224 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SSX4O60224 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
SSX4O60224 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.27■□□□□ 0.84
SSX4O60224 AC137767.1-201ENST00000602918 1920 ntBASIC20.27■□□□□ 0.84
SSX4O60224 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
SSX4O60224 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SSX4O60224 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SSX4O60224 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.26■□□□□ 0.83
SSX4O60224 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SSX4O60224 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.26■□□□□ 0.83
SSX4O60224 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SSX4O60224 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SSX4O60224 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SSX4O60224 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
SSX4O60224 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
SSX4O60224 MIR4787-201ENST00000607364 84 ntBASIC20.26■□□□□ 0.83
SSX4O60224 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SSX4O60224 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
SSX4O60224 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
SSX4O60224 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SSX4O60224 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SSX4O60224 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SSX4O60224 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.25■□□□□ 0.83
SSX4O60224 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
SSX4O60224 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
SSX4O60224 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SSX4O60224 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SSX4O60224 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SSX4O60224 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.25■□□□□ 0.83
SSX4O60224 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.25■□□□□ 0.83
SSX4O60224 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SSX4O60224 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SSX4O60224 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SSX4O60224 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms