Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SGCEO43556 AC009299.2-201ENST00000482477 511 ntBASIC19.86■□□□□ 0.77
SGCEO43556 AL451085.2-201ENST00000605085 799 ntBASIC19.86■□□□□ 0.77
SGCEO43556 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC19.86■□□□□ 0.77
SGCEO43556 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC19.86■□□□□ 0.77
SGCEO43556 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SGCEO43556 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SGCEO43556 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SGCEO43556 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SGCEO43556 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SGCEO43556 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SGCEO43556 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
SGCEO43556 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC19.85■□□□□ 0.77
SGCEO43556 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC19.85■□□□□ 0.77
SGCEO43556 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
SGCEO43556 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SGCEO43556 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.85■□□□□ 0.77
SGCEO43556 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SGCEO43556 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
SGCEO43556 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SGCEO43556 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SGCEO43556 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SGCEO43556 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SGCEO43556 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SGCEO43556 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.84■□□□□ 0.77
SGCEO43556 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SGCEO43556 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SGCEO43556 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SGCEO43556 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SGCEO43556 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SGCEO43556 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC19.84■□□□□ 0.77
SGCEO43556 CLTA-210ENST00000540080 989 ntTSL 2 BASIC19.84■□□□□ 0.77
SGCEO43556 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC19.84■□□□□ 0.77
SGCEO43556 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC19.84■□□□□ 0.77
SGCEO43556 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC19.84■□□□□ 0.77
SGCEO43556 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SGCEO43556 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC19.84■□□□□ 0.77
SGCEO43556 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SGCEO43556 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SGCEO43556 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SGCEO43556 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC19.84■□□□□ 0.77
SGCEO43556 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC19.84■□□□□ 0.77
SGCEO43556 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
SGCEO43556 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SGCEO43556 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.83■□□□□ 0.77
SGCEO43556 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.83■□□□□ 0.77
SGCEO43556 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SGCEO43556 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.83■□□□□ 0.77
SGCEO43556 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SGCEO43556 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SGCEO43556 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SGCEO43556 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
SGCEO43556 AC239859.2-201ENST00000444165 318 ntBASIC19.83■□□□□ 0.77
SGCEO43556 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SGCEO43556 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
SGCEO43556 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SGCEO43556 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SGCEO43556 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SGCEO43556 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC19.82■□□□□ 0.76
SGCEO43556 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SGCEO43556 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
SGCEO43556 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC19.82■□□□□ 0.76
SGCEO43556 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC19.82■□□□□ 0.76
SGCEO43556 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
SGCEO43556 MIR4787-201ENST00000607364 84 ntBASIC19.82■□□□□ 0.76
SGCEO43556 AC092028.1-203ENST00000608262 953 ntBASIC19.82■□□□□ 0.76
SGCEO43556 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.82■□□□□ 0.76
SGCEO43556 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SGCEO43556 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SGCEO43556 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC19.82■□□□□ 0.76
SGCEO43556 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
SGCEO43556 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC19.82■□□□□ 0.76
SGCEO43556 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC19.81■□□□□ 0.76
SGCEO43556 CASK-201ENST00000378154 2494 ntTSL 5 BASIC19.81■□□□□ 0.76
SGCEO43556 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SGCEO43556 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SGCEO43556 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
SGCEO43556 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
SGCEO43556 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC19.81■□□□□ 0.76
SGCEO43556 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SGCEO43556 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC19.81■□□□□ 0.76
SGCEO43556 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SGCEO43556 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SGCEO43556 DUSP8P5-201ENST00000422884 1815 ntBASIC19.81■□□□□ 0.76
SGCEO43556 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SGCEO43556 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
SGCEO43556 AC012676.1-201ENST00000574705 1949 ntBASIC19.8■□□□□ 0.76
SGCEO43556 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.8■□□□□ 0.76
SGCEO43556 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
SGCEO43556 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SGCEO43556 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SGCEO43556 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SGCEO43556 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SGCEO43556 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
SGCEO43556 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
SGCEO43556 MIR6722-201ENST00000617286 78 ntBASIC19.8■□□□□ 0.76
SGCEO43556 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
SGCEO43556 ANOS2P-203ENST00000472227 1816 ntBASIC19.8■□□□□ 0.76
SGCEO43556 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC19.8■□□□□ 0.76
SGCEO43556 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms