Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC28.48■■■□□ 2.15
NPHP1O15259 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC28.48■■■□□ 2.15
NPHP1O15259 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC28.48■■■□□ 2.15
NPHP1O15259 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
NPHP1O15259 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC28.47■■■□□ 2.15
NPHP1O15259 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC28.47■■■□□ 2.15
NPHP1O15259 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC28.47■■■□□ 2.15
NPHP1O15259 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC28.47■■■□□ 2.15
NPHP1O15259 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC28.47■■■□□ 2.15
NPHP1O15259 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC28.47■■■□□ 2.15
NPHP1O15259 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
NPHP1O15259 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
NPHP1O15259 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC28.47■■■□□ 2.15
NPHP1O15259 SNX3-202ENST00000349379 890 ntTSL 2 BASIC28.47■■■□□ 2.15
NPHP1O15259 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
NPHP1O15259 YBX1P1-201ENST00000445822 960 ntBASIC28.47■■■□□ 2.15
NPHP1O15259 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC28.47■■■□□ 2.15
NPHP1O15259 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC28.47■■■□□ 2.15
NPHP1O15259 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
NPHP1O15259 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
NPHP1O15259 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC28.46■■■□□ 2.15
NPHP1O15259 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC28.46■■■□□ 2.15
NPHP1O15259 AC022517.1-201ENST00000592429 346 ntBASIC28.46■■■□□ 2.15
NPHP1O15259 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC28.46■■■□□ 2.15
NPHP1O15259 RARRES2P11-201ENST00000635158 484 ntBASIC28.46■■■□□ 2.15
NPHP1O15259 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC28.46■■■□□ 2.15
NPHP1O15259 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
NPHP1O15259 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC28.45■■■□□ 2.15
NPHP1O15259 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC28.45■■■□□ 2.15
NPHP1O15259 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC28.45■■■□□ 2.15
NPHP1O15259 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
NPHP1O15259 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC28.45■■■□□ 2.15
NPHP1O15259 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC28.45■■■□□ 2.15
NPHP1O15259 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC28.45■■■□□ 2.14
NPHP1O15259 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
NPHP1O15259 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
NPHP1O15259 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC28.45■■■□□ 2.14
NPHP1O15259 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
NPHP1O15259 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC28.44■■■□□ 2.14
NPHP1O15259 HACD1-201ENST00000326961 773 ntTSL 2 BASIC28.44■■■□□ 2.14
NPHP1O15259 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
NPHP1O15259 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC28.44■■■□□ 2.14
NPHP1O15259 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC28.44■■■□□ 2.14
NPHP1O15259 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC28.44■■■□□ 2.14
NPHP1O15259 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
NPHP1O15259 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC28.43■■■□□ 2.14
NPHP1O15259 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC28.43■■■□□ 2.14
NPHP1O15259 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC28.43■■■□□ 2.14
NPHP1O15259 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
NPHP1O15259 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC28.43■■■□□ 2.14
NPHP1O15259 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC28.43■■■□□ 2.14
NPHP1O15259 AICDA-202ENST00000537228 667 ntTSL 5 BASIC28.43■■■□□ 2.14
NPHP1O15259 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC28.43■■■□□ 2.14
NPHP1O15259 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC28.43■■■□□ 2.14
NPHP1O15259 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
NPHP1O15259 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
NPHP1O15259 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
NPHP1O15259 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC28.42■■■□□ 2.14
NPHP1O15259 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC28.42■■■□□ 2.14
NPHP1O15259 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC28.42■■■□□ 2.14
NPHP1O15259 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
NPHP1O15259 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC28.42■■■□□ 2.14
NPHP1O15259 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC28.42■■■□□ 2.14
NPHP1O15259 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC28.42■■■□□ 2.14
NPHP1O15259 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
NPHP1O15259 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC28.42■■■□□ 2.14
NPHP1O15259 CD37-213ENST00000598095 1598 ntTSL 2 BASIC28.41■■■□□ 2.14
NPHP1O15259 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
NPHP1O15259 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
NPHP1O15259 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
NPHP1O15259 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC28.41■■■□□ 2.14
NPHP1O15259 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC28.41■■■□□ 2.14
NPHP1O15259 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
NPHP1O15259 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC28.41■■■□□ 2.14
NPHP1O15259 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC28.41■■■□□ 2.14
NPHP1O15259 KRT18P5-201ENST00000436075 1291 ntBASIC28.41■■■□□ 2.14
NPHP1O15259 SLC47A1P1-202ENST00000449666 945 ntBASIC28.41■■■□□ 2.14
NPHP1O15259 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
NPHP1O15259 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC28.41■■■□□ 2.14
NPHP1O15259 AL031602.1-201ENST00000633169 911 ntBASIC28.41■■■□□ 2.14
NPHP1O15259 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
NPHP1O15259 DUSP8P4-201ENST00000399538 1761 ntBASIC28.41■■■□□ 2.14
NPHP1O15259 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC28.41■■■□□ 2.14
NPHP1O15259 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC28.41■■■□□ 2.14
NPHP1O15259 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
NPHP1O15259 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC28.41■■■□□ 2.14
NPHP1O15259 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC28.41■■■□□ 2.14
NPHP1O15259 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
NPHP1O15259 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
NPHP1O15259 AL161729.1-201ENST00000604104 1402 ntBASIC28.4■■■□□ 2.14
NPHP1O15259 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC28.4■■■□□ 2.14
NPHP1O15259 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
NPHP1O15259 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC28.39■■■□□ 2.14
NPHP1O15259 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC28.39■■■□□ 2.14
NPHP1O15259 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.13
NPHP1O15259 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
NPHP1O15259 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
NPHP1O15259 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC28.38■■■□□ 2.13
NPHP1O15259 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC28.38■■■□□ 2.13
NPHP1O15259 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC28.38■■■□□ 2.13
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms