Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 VGF-203ENST00000611537 1622 ntTSL 5 BASIC17.91■□□□□ 0.46
COL6A5A8TX70 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A5A8TX70 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A5A8TX70 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A5A8TX70 POU5F1P3-201ENST00000428824 1078 ntBASIC17.9■□□□□ 0.46
COL6A5A8TX70 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
COL6A5A8TX70 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A5A8TX70 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC17.9■□□□□ 0.46
COL6A5A8TX70 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
COL6A5A8TX70 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
COL6A5A8TX70 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC17.89■□□□□ 0.46
COL6A5A8TX70 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC17.89■□□□□ 0.46
COL6A5A8TX70 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
COL6A5A8TX70 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A5A8TX70 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
COL6A5A8TX70 METTL15-202ENST00000403099 795 ntTSL 5 BASIC17.89■□□□□ 0.45
COL6A5A8TX70 DRD5P2-201ENST00000421395 2012 ntBASIC17.88■□□□□ 0.45
COL6A5A8TX70 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC17.88■□□□□ 0.45
COL6A5A8TX70 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.88■□□□□ 0.45
COL6A5A8TX70 SLC29A4P1-201ENST00000398760 971 ntBASIC17.88■□□□□ 0.45
COL6A5A8TX70 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.88■□□□□ 0.45
COL6A5A8TX70 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC17.88■□□□□ 0.45
COL6A5A8TX70 ITM2C-210ENST00000620962 501 ntBASIC17.88■□□□□ 0.45
COL6A5A8TX70 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC17.88■□□□□ 0.45
COL6A5A8TX70 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A5A8TX70 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
COL6A5A8TX70 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC17.87■□□□□ 0.45
COL6A5A8TX70 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL6A5A8TX70 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
COL6A5A8TX70 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
COL6A5A8TX70 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
COL6A5A8TX70 SHD-204ENST00000599689 1729 ntTSL 5 BASIC17.87■□□□□ 0.45
COL6A5A8TX70 SMUG1P1-201ENST00000590640 811 ntBASIC17.87■□□□□ 0.45
COL6A5A8TX70 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
COL6A5A8TX70 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC17.87■□□□□ 0.45
COL6A5A8TX70 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL6A5A8TX70 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC17.86■□□□□ 0.45
COL6A5A8TX70 MFSD11-216ENST00000590393 1141 ntBASIC17.86■□□□□ 0.45
COL6A5A8TX70 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL6A5A8TX70 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
COL6A5A8TX70 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC17.86■□□□□ 0.45
COL6A5A8TX70 KRT19P1-201ENST00000405746 1186 ntBASIC17.86■□□□□ 0.45
COL6A5A8TX70 KRT18P11-201ENST00000435214 1283 ntBASIC17.86■□□□□ 0.45
COL6A5A8TX70 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC17.86■□□□□ 0.45
COL6A5A8TX70 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
COL6A5A8TX70 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
COL6A5A8TX70 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A5A8TX70 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A5A8TX70 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC17.85■□□□□ 0.45
COL6A5A8TX70 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC17.85■□□□□ 0.45
COL6A5A8TX70 NKILA-201ENST00000613231 537 ntTSL 4 BASIC17.85■□□□□ 0.45
COL6A5A8TX70 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
COL6A5A8TX70 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC17.85■□□□□ 0.45
COL6A5A8TX70 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A5A8TX70 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.85■□□□□ 0.45
COL6A5A8TX70 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC17.85■□□□□ 0.45
COL6A5A8TX70 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A5A8TX70 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC17.85■□□□□ 0.45
COL6A5A8TX70 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A5A8TX70 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
COL6A5A8TX70 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A5A8TX70 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC17.85■□□□□ 0.45
COL6A5A8TX70 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A5A8TX70 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A5A8TX70 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
COL6A5A8TX70 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A5A8TX70 KRT18P29-201ENST00000397031 1267 ntBASIC17.85■□□□□ 0.45
COL6A5A8TX70 TPRG1LP1-201ENST00000598702 760 ntBASIC17.85■□□□□ 0.45
COL6A5A8TX70 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A5A8TX70 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.85■□□□□ 0.45
COL6A5A8TX70 AL050303.2-201ENST00000619798 666 ntBASIC17.85■□□□□ 0.45
COL6A5A8TX70 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A5A8TX70 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A5A8TX70 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A5A8TX70 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
COL6A5A8TX70 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC17.84■□□□□ 0.45
COL6A5A8TX70 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC17.84■□□□□ 0.45
COL6A5A8TX70 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A5A8TX70 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A5A8TX70 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC17.83■□□□□ 0.45
COL6A5A8TX70 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
COL6A5A8TX70 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC17.83■□□□□ 0.44
COL6A5A8TX70 GCSHP5-201ENST00000443090 522 ntBASIC17.83■□□□□ 0.44
COL6A5A8TX70 TSPY6P-201ENST00000448518 926 ntBASIC17.83■□□□□ 0.44
COL6A5A8TX70 SLC7A5P2-201ENST00000553010 536 ntBASIC17.83■□□□□ 0.44
COL6A5A8TX70 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A5A8TX70 pRNA.6-201ENST00000610482 90 ntBASIC17.83■□□□□ 0.44
COL6A5A8TX70 pRNA.5-201ENST00000612139 90 ntBASIC17.83■□□□□ 0.44
COL6A5A8TX70 pRNA.11-201ENST00000618423 90 ntBASIC17.83■□□□□ 0.44
COL6A5A8TX70 pRNA.13-201ENST00000619112 90 ntBASIC17.83■□□□□ 0.44
COL6A5A8TX70 TFG-210ENST00000620299 1289 ntTSL 5 BASIC17.83■□□□□ 0.44
COL6A5A8TX70 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A5A8TX70 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A5A8TX70 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A5A8TX70 LHPP-203ENST00000392757 840 ntTSL 3 BASIC17.83■□□□□ 0.44
COL6A5A8TX70 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC17.83■□□□□ 0.44
COL6A5A8TX70 RGMA-211ENST00000557420 989 ntTSL 3 BASIC17.83■□□□□ 0.44
COL6A5A8TX70 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC17.82■□□□□ 0.44
COL6A5A8TX70 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL6A5A8TX70 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms