Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 CRCP-204ENST00000398684 492 ntTSL 2 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 AC073869.2-201ENST00000417338 1026 ntBASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 OARD1-204ENST00000464633 717 ntTSL 2 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 AC116345.2-201ENST00000512837 523 ntBASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 CNTNAP3P2-201ENST00000617175 3861 ntBASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
SHROOM3Q8TF72 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 NPPA-201ENST00000376476 728 ntTSL 3 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 AL627389.1-201ENST00000413508 1182 ntBASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 RN7SL181P-201ENST00000462921 277 ntBASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 SNHG25-202ENST00000582965 278 ntTSL 2 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 CDK7-214ENST00000626796 358 ntTSL 5 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 AC244452.3-201ENST00000636814 210 ntBASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 PDE8B-205ENST00000346042 3276 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 AC072061.1-201ENST00000569710 2234 ntBASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 CICP4-201ENST00000447359 2812 ntBASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 NCLP1-201ENST00000445357 1963 ntBASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 AC008132.1-202ENST00000342005 1389 ntBASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 AC007274.2-201ENST00000421675 662 ntBASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 SKA2-205ENST00000580541 689 ntTSL 3 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC14.54□□□□□ -0.08
SHROOM3Q8TF72 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
SHROOM3Q8TF72 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms