Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH6P55285 CIART-201ENST00000290363 1746 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
CDH6P55285 PISD-209ENST00000439502 1963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH6P55285 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH6P55285 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.94□□□□□ -0.02
CDH6P55285 DMBT1P1-203ENST00000636837 4628 ntBASIC14.94□□□□□ -0.02
CDH6P55285 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
CDH6P55285 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH6P55285 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CDH6P55285 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC14.94□□□□□ -0.02
CDH6P55285 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH6P55285 AC138969.2-201ENST00000532739 9932 ntBASIC14.94□□□□□ -0.02
CDH6P55285 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH6P55285 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CDH6P55285 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH6P55285 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH6P55285 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH6P55285 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH6P55285 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH6P55285 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
CDH6P55285 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC14.94□□□□□ -0.02
CDH6P55285 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH6P55285 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH6P55285 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH6P55285 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH6P55285 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC14.94□□□□□ -0.02
CDH6P55285 APOC3-202ENST00000375345 604 ntTSL 5 BASIC14.94□□□□□ -0.02
CDH6P55285 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
CDH6P55285 UBE2I-206ENST00000403747 1217 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
CDH6P55285 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CDH6P55285 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC14.94□□□□□ -0.02
CDH6P55285 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC14.94□□□□□ -0.02
CDH6P55285 RNMTL1P1-201ENST00000454103 560 ntBASIC14.94□□□□□ -0.02
CDH6P55285 TUBB8P8-201ENST00000458717 1058 ntBASIC14.94□□□□□ -0.02
CDH6P55285 RPL13AP20-201ENST00000459725 609 ntBASIC14.94□□□□□ -0.02
CDH6P55285 AC022217.1-201ENST00000521069 738 ntBASIC14.94□□□□□ -0.02
CDH6P55285 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC14.94□□□□□ -0.02
CDH6P55285 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC14.94□□□□□ -0.02
CDH6P55285 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC14.94□□□□□ -0.02
CDH6P55285 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC14.94□□□□□ -0.02
CDH6P55285 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC14.94□□□□□ -0.02
CDH6P55285 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC14.94□□□□□ -0.02
CDH6P55285 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC14.94□□□□□ -0.02
CDH6P55285 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC14.94□□□□□ -0.02
CDH6P55285 AC008805.1-201ENST00000590892 364 ntBASIC14.94□□□□□ -0.02
CDH6P55285 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CDH6P55285 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC14.94□□□□□ -0.02
CDH6P55285 TECR-220ENST00000600083 1204 ntTSL 2 BASIC14.94□□□□□ -0.02
CDH6P55285 AL096828.3-201ENST00000615354 462 ntBASIC14.94□□□□□ -0.02
CDH6P55285 AC090386.2-201ENST00000623010 1039 ntBASIC14.94□□□□□ -0.02
CDH6P55285 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC14.94□□□□□ -0.02
CDH6P55285 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC14.94□□□□□ -0.02
CDH6P55285 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CDH6P55285 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH6P55285 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CDH6P55285 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
CDH6P55285 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.94□□□□□ -0.02
CDH6P55285 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CDH6P55285 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CDH6P55285 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH6P55285 CCT8L1P-201ENST00000465400 1674 ntBASIC14.93□□□□□ -0.02
CDH6P55285 TUBB1P2-201ENST00000422712 1306 ntBASIC14.93□□□□□ -0.02
CDH6P55285 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC14.93□□□□□ -0.02
CDH6P55285 TUBB1P1-201ENST00000503144 1300 ntBASIC14.93□□□□□ -0.02
CDH6P55285 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH6P55285 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC14.93□□□□□ -0.02
CDH6P55285 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
CDH6P55285 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH6P55285 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
CDH6P55285 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH6P55285 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH6P55285 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC14.93□□□□□ -0.02
CDH6P55285 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CDH6P55285 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC14.93□□□□□ -0.02
CDH6P55285 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH6P55285 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH6P55285 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CDH6P55285 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH6P55285 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
CDH6P55285 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CDH6P55285 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH6P55285 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
CDH6P55285 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH6P55285 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
CDH6P55285 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CDH6P55285 BTBD6P1-201ENST00000412176 1267 ntBASIC14.93□□□□□ -0.02
CDH6P55285 HNRNPA1P63-201ENST00000427917 963 ntBASIC14.93□□□□□ -0.02
CDH6P55285 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC14.93□□□□□ -0.02
CDH6P55285 RPL18P13-201ENST00000478088 569 ntBASIC14.93□□□□□ -0.02
CDH6P55285 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CDH6P55285 FAM86HP-204ENST00000513466 959 ntBASIC14.93□□□□□ -0.02
CDH6P55285 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC14.93□□□□□ -0.02
CDH6P55285 SCARNA21-201ENST00000517026 139 ntBASIC14.93□□□□□ -0.02
CDH6P55285 AGER-214ENST00000538695 487 ntTSL 2 BASIC14.93□□□□□ -0.02
CDH6P55285 PGAM1P5-201ENST00000548011 764 ntBASIC14.93□□□□□ -0.02
CDH6P55285 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC14.93□□□□□ -0.02
CDH6P55285 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC14.93□□□□□ -0.02
CDH6P55285 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC14.93□□□□□ -0.02
CDH6P55285 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC14.93□□□□□ -0.02
CDH6P55285 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms