Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
MSX2P35548 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC13.74□□□□□ -0.21
MSX2P35548 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC13.74□□□□□ -0.21
MSX2P35548 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX2P35548 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX2P35548 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
MSX2P35548 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC13.74□□□□□ -0.21
MSX2P35548 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
MSX2P35548 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
MSX2P35548 B9D1-203ENST00000395615 805 ntTSL 3 BASIC13.74□□□□□ -0.21
MSX2P35548 C1QBPP1-201ENST00000400117 770 ntBASIC13.74□□□□□ -0.21
MSX2P35548 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC13.74□□□□□ -0.21
MSX2P35548 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC13.74□□□□□ -0.21
MSX2P35548 AL161932.2-201ENST00000435436 679 ntBASIC13.74□□□□□ -0.21
MSX2P35548 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC13.74□□□□□ -0.21
MSX2P35548 RHOA-206ENST00000454011 889 ntTSL 2 BASIC13.74□□□□□ -0.21
MSX2P35548 STOM-203ENST00000538954 1257 ntTSL 5 BASIC13.74□□□□□ -0.21
MSX2P35548 AC104794.3-201ENST00000566840 1248 ntBASIC13.74□□□□□ -0.21
MSX2P35548 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
MSX2P35548 CACNA1C-211ENST00000399617 7482 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
MSX2P35548 COPS7B-223ENST00000611614 2468 ntTSL 3 BASIC13.74□□□□□ -0.21
MSX2P35548 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
MSX2P35548 BAIAP3-207ENST00000562208 3663 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
MSX2P35548 AL359845.1-201ENST00000458202 1648 ntBASIC13.74□□□□□ -0.21
MSX2P35548 ZNF774-201ENST00000354377 3202 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX2P35548 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX2P35548 Z97192.2-201ENST00000393264 2379 ntTSL 2 BASIC13.74□□□□□ -0.21
MSX2P35548 DLGAP1-AS1-201ENST00000317114 1966 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
MSX2P35548 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
MSX2P35548 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC13.74□□□□□ -0.21
MSX2P35548 BRSK2-207ENST00000528710 3528 ntTSL 2 BASIC13.74□□□□□ -0.21
MSX2P35548 GUCY1B3-204ENST00000505154 2316 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
MSX2P35548 ELN-234ENST00000621115 3452 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
MSX2P35548 SIRPA-203ENST00000400068 4201 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX2P35548 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX2P35548 ANKRD20A1-201ENST00000562196 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX2P35548 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
MSX2P35548 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC13.73□□□□□ -0.21
MSX2P35548 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MSX2P35548 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC13.73□□□□□ -0.21
MSX2P35548 HNRNPLL-209ENST00000449105 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MSX2P35548 DSN1-204ENST00000426836 2441 ntAPPRIS P3 TSL 2 BASIC13.73□□□□□ -0.21
MSX2P35548 MAT2B-204ENST00000518095 3409 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
MSX2P35548 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
MSX2P35548 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
MSX2P35548 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MSX2P35548 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC13.73□□□□□ -0.21
MSX2P35548 DLX4-206ENST00000611342 1662 ntBASIC13.73□□□□□ -0.21
MSX2P35548 KCNT1-213ENST00000630792 3606 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
MSX2P35548 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MSX2P35548 ZNF706-209ENST00000520347 3502 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
MSX2P35548 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
MSX2P35548 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC13.73□□□□□ -0.21
MSX2P35548 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC13.73□□□□□ -0.21
MSX2P35548 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
MSX2P35548 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC13.73□□□□□ -0.21
MSX2P35548 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
MSX2P35548 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
MSX2P35548 AL391647.1-201ENST00000395664 511 ntBASIC13.73□□□□□ -0.21
MSX2P35548 UPF3AP3-201ENST00000420996 769 ntBASIC13.73□□□□□ -0.21
MSX2P35548 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC13.73□□□□□ -0.21
MSX2P35548 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC13.73□□□□□ -0.21
MSX2P35548 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC13.73□□□□□ -0.21
MSX2P35548 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC13.73□□□□□ -0.21
MSX2P35548 TPRX2P-201ENST00000535362 881 ntBASIC13.73□□□□□ -0.21
MSX2P35548 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC13.73□□□□□ -0.21
MSX2P35548 PRR29-204ENST00000577953 565 ntTSL 4 BASIC13.73□□□□□ -0.21
MSX2P35548 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
MSX2P35548 AC138696.2-201ENST00000607376 223 ntBASIC13.73□□□□□ -0.21
MSX2P35548 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
MSX2P35548 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
MSX2P35548 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MSX2P35548 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MSX2P35548 DRD2-208ENST00000542968 2467 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
MSX2P35548 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
MSX2P35548 CTDP1-202ENST00000299543 3380 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
MSX2P35548 TMBIM1-202ENST00000396809 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
MSX2P35548 ZIK1-204ENST00000597850 4181 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
MSX2P35548 SNX25-201ENST00000264694 3264 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
MSX2P35548 AC015819.3-201ENST00000624305 2674 ntBASIC13.73□□□□□ -0.21
MSX2P35548 AC009093.2-202ENST00000620513 2079 ntBASIC13.73□□□□□ -0.21
MSX2P35548 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 PPT2-EGFL8-202ENST00000422437 4181 ntAPPRIS P5 TSL 5 BASIC13.72□□□□□ -0.21
MSX2P35548 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 DNAJC14-202ENST00000317287 2774 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
MSX2P35548 AC010547.1-201ENST00000500612 2793 ntTSL 2 BASIC13.72□□□□□ -0.21
MSX2P35548 WDFY1-201ENST00000233055 4660 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 SERPINI1-201ENST00000295777 1907 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 MTHFSD-204ENST00000546093 2451 ntTSL 2 BASIC13.72□□□□□ -0.21
MSX2P35548 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 NPTN-201ENST00000345330 2444 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC13.72□□□□□ -0.21
MSX2P35548 AC104758.3-203ENST00000562938 2123 ntBASIC13.72□□□□□ -0.21
MSX2P35548 CLUHP2-201ENST00000426660 1303 ntBASIC13.72□□□□□ -0.21
MSX2P35548 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 TBC1D2-204ENST00000375066 3198 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
MSX2P35548 ARHGAP33-204ENST00000378944 4219 ntAPPRIS ALT2 TSL 2 BASIC13.72□□□□□ -0.21
MSX2P35548 POM121L14P-201ENST00000406100 1558 ntBASIC13.72□□□□□ -0.21
MSX2P35548 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC13.72□□□□□ -0.21
MSX2P35548 AC026271.4-201ENST00000578214 1833 ntBASIC13.72□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms