Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 MARK2P16-201ENST00000605714 1723 ntBASIC11.58□□□□□ -0.56
HOXA3O43365 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC11.58□□□□□ -0.56
HOXA3O43365 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 ZNF862-201ENST00000223210 6950 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
HOXA3O43365 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC11.58□□□□□ -0.56
HOXA3O43365 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 TPO-203ENST00000346956 2923 ntTSL 5 BASIC11.58□□□□□ -0.56
HOXA3O43365 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC11.58□□□□□ -0.56
HOXA3O43365 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC11.58□□□□□ -0.56
HOXA3O43365 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 Z69890.1-201ENST00000382990 339 ntBASIC11.58□□□□□ -0.56
HOXA3O43365 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC11.58□□□□□ -0.56
HOXA3O43365 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC11.58□□□□□ -0.56
HOXA3O43365 ST13P19-201ENST00000442505 1124 ntBASIC11.58□□□□□ -0.56
HOXA3O43365 RN7SL277P-201ENST00000481521 288 ntBASIC11.58□□□□□ -0.56
HOXA3O43365 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC11.58□□□□□ -0.56
HOXA3O43365 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC11.58□□□□□ -0.56
HOXA3O43365 CFL1-206ENST00000527344 962 ntTSL 2 BASIC11.58□□□□□ -0.56
HOXA3O43365 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC11.58□□□□□ -0.56
HOXA3O43365 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC11.58□□□□□ -0.56
HOXA3O43365 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
HOXA3O43365 AC079416.2-201ENST00000625035 1193 ntBASIC11.58□□□□□ -0.56
HOXA3O43365 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC11.58□□□□□ -0.56
HOXA3O43365 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC11.58□□□□□ -0.56
HOXA3O43365 KRT8P31-201ENST00000504812 1408 ntBASIC11.58□□□□□ -0.56
HOXA3O43365 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 DLG1-AS1-202ENST00000430666 1694 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC11.58□□□□□ -0.56
HOXA3O43365 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC11.58□□□□□ -0.56
HOXA3O43365 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 AC006486.2-201ENST00000624246 2199 ntBASIC11.58□□□□□ -0.56
HOXA3O43365 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC11.58□□□□□ -0.56
HOXA3O43365 AC106881.1-201ENST00000605849 3329 ntBASIC11.58□□□□□ -0.56
HOXA3O43365 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
HOXA3O43365 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC11.58□□□□□ -0.56
HOXA3O43365 ACOX1-201ENST00000293217 7514 ntAPPRIS P5 TSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
HOXA3O43365 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
HOXA3O43365 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HOXA3O43365 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HOXA3O43365 IRS1-201ENST00000305123 9705 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HOXA3O43365 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
HOXA3O43365 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HOXA3O43365 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC11.57□□□□□ -0.56
HOXA3O43365 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
HOXA3O43365 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC11.57□□□□□ -0.56
HOXA3O43365 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC11.57□□□□□ -0.56
HOXA3O43365 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC11.57□□□□□ -0.56
HOXA3O43365 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC11.57□□□□□ -0.56
HOXA3O43365 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
HOXA3O43365 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HOXA3O43365 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
HOXA3O43365 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
HOXA3O43365 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC11.57□□□□□ -0.56
HOXA3O43365 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
HOXA3O43365 AC018442.1-201ENST00000421439 2061 ntBASIC11.57□□□□□ -0.56
HOXA3O43365 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HOXA3O43365 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HOXA3O43365 KRT17P5-201ENST00000332088 839 ntBASIC11.57□□□□□ -0.56
HOXA3O43365 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
HOXA3O43365 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC11.57□□□□□ -0.56
HOXA3O43365 SOD2-202ENST00000367054 815 ntTSL 2 BASIC11.57□□□□□ -0.56
HOXA3O43365 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC11.57□□□□□ -0.56
HOXA3O43365 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HOXA3O43365 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
HOXA3O43365 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
HOXA3O43365 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC11.57□□□□□ -0.56
HOXA3O43365 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
HOXA3O43365 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC11.57□□□□□ -0.56
HOXA3O43365 NAGK-204ENST00000443872 878 ntTSL 3 BASIC11.57□□□□□ -0.56
HOXA3O43365 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC11.57□□□□□ -0.56
HOXA3O43365 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC11.57□□□□□ -0.56
HOXA3O43365 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
HOXA3O43365 AC027237.1-201ENST00000560942 655 ntBASIC11.57□□□□□ -0.56
HOXA3O43365 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC11.57□□□□□ -0.56
HOXA3O43365 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC11.57□□□□□ -0.56
HOXA3O43365 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
HOXA3O43365 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC11.57□□□□□ -0.56
HOXA3O43365 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC11.57□□□□□ -0.56
HOXA3O43365 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC11.57□□□□□ -0.56
HOXA3O43365 MIR6842-201ENST00000612539 65 ntBASIC11.57□□□□□ -0.56
HOXA3O43365 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms