Protein–RNA interactions for Protein: O00370

LINE-1 retrotransposable element ORF2 protein, humanhuman

Predictions only

Length 1,275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
O00370 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
O00370 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
O00370 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC15.31■□□□□ 0.04
O00370 RER1-207ENST00000488353 2469 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
O00370 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
O00370 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
O00370 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC15.31■□□□□ 0.04
O00370 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC15.31■□□□□ 0.04
O00370 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC15.31■□□□□ 0.04
O00370 AP001258.2-201ENST00000529891 490 ntBASIC15.31■□□□□ 0.04
O00370 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC15.31■□□□□ 0.04
O00370 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
O00370 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC15.31■□□□□ 0.04
O00370 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC15.31■□□□□ 0.04
O00370 MIR6799-201ENST00000620297 69 ntBASIC15.31■□□□□ 0.04
O00370 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
O00370 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
O00370 KRT8P24-201ENST00000560290 1559 ntBASIC15.31■□□□□ 0.04
O00370 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
O00370 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
O00370 DDC-213ENST00000617822 1809 ntTSL 3 BASIC15.31■□□□□ 0.04
O00370 SLC6A6P1-201ENST00000413933 1850 ntBASIC15.31■□□□□ 0.04
O00370 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
O00370 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC15.31■□□□□ 0.04
O00370 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC15.31■□□□□ 0.04
O00370 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC15.31■□□□□ 0.04
O00370 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
O00370 CPA5-205ENST00000466363 2099 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
O00370 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC15.31■□□□□ 0.04
O00370 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC15.31■□□□□ 0.04
O00370 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC15.31■□□□□ 0.04
O00370 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
O00370 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
O00370 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
O00370 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
O00370 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
O00370 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
O00370 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
O00370 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
O00370 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
O00370 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
O00370 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
O00370 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC15.3■□□□□ 0.04
O00370 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC15.3■□□□□ 0.04
O00370 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
O00370 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC15.3■□□□□ 0.04
O00370 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
O00370 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC15.3■□□□□ 0.04
O00370 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC15.3■□□□□ 0.04
O00370 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC15.3■□□□□ 0.04
O00370 RAN-210ENST00000541630 1475 ntTSL 2 BASIC15.3■□□□□ 0.04
O00370 ANP32A-210ENST00000560303 724 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
O00370 SYT17-208ENST00000568433 812 ntTSL 3 BASIC15.3■□□□□ 0.04
O00370 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC15.3■□□□□ 0.04
O00370 PAM16-211ENST00000575848 518 ntTSL 3 BASIC15.3■□□□□ 0.04
O00370 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
O00370 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC15.3■□□□□ 0.04
O00370 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
O00370 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC15.3■□□□□ 0.04
O00370 AL157813.1-201ENST00000612996 587 ntBASIC15.3■□□□□ 0.04
O00370 AC130686.1-201ENST00000622936 2466 ntBASIC15.3■□□□□ 0.04
O00370 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC15.3■□□□□ 0.04
O00370 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
O00370 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC15.3■□□□□ 0.04
O00370 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
O00370 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
O00370 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
O00370 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
O00370 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
O00370 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
O00370 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
O00370 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
O00370 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
O00370 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC15.29■□□□□ 0.04
O00370 AL356585.2-201ENST00000625078 2396 ntBASIC15.29■□□□□ 0.04
O00370 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
O00370 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
O00370 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC15.29■□□□□ 0.04
O00370 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC15.29■□□□□ 0.04
O00370 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
O00370 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
O00370 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC15.29■□□□□ 0.04
O00370 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
O00370 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
O00370 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
O00370 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
O00370 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
O00370 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
O00370 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC15.29■□□□□ 0.04
O00370 PLA1A-204ENST00000488919 1456 ntTSL 2 BASIC15.29■□□□□ 0.04
O00370 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC15.29■□□□□ 0.04
O00370 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC15.29■□□□□ 0.04
O00370 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
O00370 JTB-202ENST00000356648 1040 ntTSL 2 BASIC15.29■□□□□ 0.04
O00370 MIR1247-201ENST00000408206 136 ntBASIC15.29■□□□□ 0.04
O00370 AC016700.1-201ENST00000429424 312 ntBASIC15.29■□□□□ 0.04
O00370 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC15.29■□□□□ 0.04
O00370 AC009487.3-201ENST00000505579 560 ntTSL 4 BASIC15.29■□□□□ 0.04
O00370 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
O00370 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms