Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ZSCAN30-202ENST00000420878 4323 ntAPPRIS P1 TSL 2 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 ZNF667-201ENST00000292069 3832 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 ZSCAN21-201ENST00000292450 2005 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 DAND5-201ENST00000317060 1877 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 GIT2-203ENST00000355312 5466 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 EPS8L3-203ENST00000369805 2325 ntAPPRIS P4 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 CTPS1-202ENST00000372621 3201 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 AL353593.1-201ENST00000602517 3955 ntBASIC8.84□□□□□ -0.99
LINC00643Q86TS7 DECR2-212ENST00000627716 352 ntTSL 2 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 PFKL-212ENST00000628044 129 ntTSL 3 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 FP565324.1-201ENST00000636427 3659 ntAPPRIS P1 TSL 5 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 TRAF3IP2-207ENST00000368761 5128 ntAPPRIS P3 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 CACNA2D2-206ENST00000479441 3453 ntAPPRIS ALT2 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 OSBPL7-202ENST00000392507 3349 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 AC092802.1-201ENST00000421762 2447 ntTSL 2 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 PCDH20-201ENST00000409204 4778 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 FKBP4-201ENST00000001008 3732 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 DAB1-207ENST00000420954 1817 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 MMP19-206ENST00000548629 1813 ntTSL 5 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 PDIA3P1-201ENST00000471856 1510 ntBASIC8.84□□□□□ -0.99
LINC00643Q86TS7 PXK-210ENST00000479241 2817 ntTSL 2 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 POLR3E-201ENST00000299853 3697 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 PXN-204ENST00000424649 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 PCBP1-AS1-227ENST00000435880 2386 ntTSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 RPH3A-201ENST00000389385 4679 ntAPPRIS ALT2 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 MIS12-202ENST00000573759 2204 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 ZNF300-203ENST00000418587 3226 ntTSL 2 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 EPHA5-205ENST00000613740 8355 ntAPPRIS ALT2 TSL 1 (best) BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 TEX26-AS1-205ENST00000585870 2053 ntTSL 2 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 AC091181.1-201ENST00000623762 2098 ntBASIC8.84□□□□□ -0.99
LINC00643Q86TS7 MYO19-213ENST00000614623 4054 ntAPPRIS P1 TSL 2 BASIC8.84□□□□□ -0.99
LINC00643Q86TS7 KCNK5-201ENST00000359534 3756 ntAPPRIS P1 TSL 1 (best) BASIC8.84□□□□□ -1
LINC00643Q86TS7 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC8.84□□□□□ -1
LINC00643Q86TS7 SALL4P5-201ENST00000419001 1760 ntBASIC8.84□□□□□ -1
LINC00643Q86TS7 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 PPFIA2-214ENST00000549325 4727 ntTSL 5 BASIC8.83□□□□□ -1
LINC00643Q86TS7 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC8.83□□□□□ -1
LINC00643Q86TS7 LDLRAD4-AS1-201ENST00000588672 2190 ntTSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 RAVER1-201ENST00000293677 3595 ntAPPRIS P2 TSL 5 BASIC8.83□□□□□ -1
LINC00643Q86TS7 ZNF572-201ENST00000319286 3275 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 SLIT2-202ENST00000503823 5233 ntTSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 FAS-204ENST00000355740 2563 ntAPPRIS P4 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 SDCCAG8-201ENST00000366541 2567 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 NRDC-214ENST00000544028 3819 ntTSL 5 BASIC8.83□□□□□ -1
LINC00643Q86TS7 NSD3-202ENST00000317025 10776 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 GPT2-202ENST00000440783 4228 ntTSL 2 BASIC8.83□□□□□ -1
LINC00643Q86TS7 CYP11B1-203ENST00000377675 2280 ntTSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 SLC5A11-205ENST00000545376 2294 ntTSL 2 BASIC8.83□□□□□ -1
LINC00643Q86TS7 GRHL3-203ENST00000356046 2804 ntTSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 BICRAL-203ENST00000614467 6510 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 MYADM-204ENST00000391770 3056 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 CCDC88A-214ENST00000621814 3089 ntTSL 5 BASIC8.83□□□□□ -1
LINC00643Q86TS7 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 GOLGA8O-201ENST00000509311 1997 ntAPPRIS P2 TSL 5 BASIC8.83□□□□□ -1
LINC00643Q86TS7 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 SPTBN5-201ENST00000320955 11725 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC8.83□□□□□ -1
LINC00643Q86TS7 SALL2-207ENST00000614342 4942 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 ADGRG5-202ENST00000349457 3557 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 USP17L6P-201ENST00000382470 1197 ntBASIC8.83□□□□□ -1
LINC00643Q86TS7 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC8.83□□□□□ -1
LINC00643Q86TS7 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC8.83□□□□□ -1
LINC00643Q86TS7 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC8.83□□□□□ -1
LINC00643Q86TS7 ELP6-209ENST00000446787 894 ntTSL 3 BASIC8.83□□□□□ -1
LINC00643Q86TS7 PFN2-205ENST00000461868 613 ntTSL 2 BASIC8.83□□□□□ -1
LINC00643Q86TS7 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC8.83□□□□□ -1
LINC00643Q86TS7 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC8.83□□□□□ -1
LINC00643Q86TS7 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC8.83□□□□□ -1
LINC00643Q86TS7 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC8.83□□□□□ -1
LINC00643Q86TS7 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC8.83□□□□□ -1
LINC00643Q86TS7 C2orf69P3-201ENST00000565542 1120 ntBASIC8.83□□□□□ -1
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms