Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 KCNE1-202ENST00000399284 666 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 POLR3H-204ENST00000407461 802 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 RN7SL846P-201ENST00000467429 292 ntBASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 AC090820.1-201ENST00000519722 591 ntBASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CCDC88AQ3V6T2 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 PSMC5-201ENST00000310144 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 LINC00115-201ENST00000473798 1317 ntBASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 FAM226B-201ENST00000602508 1490 ntBASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 AC103592.1-201ENST00000394513 664 ntBASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 FAM197Y6-201ENST00000420524 766 ntBASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 STAG3L3-203ENST00000436857 1033 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 AL137026.2-201ENST00000437014 841 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 RN7SL440P-201ENST00000577855 343 ntBASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 AC015802.1-201ENST00000588104 1449 ntBASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 CSTP2-201ENST00000610599 398 ntBASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 ZFAS1-208ENST00000618800 597 ntTSL 3 BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 IL18BP-201ENST00000260049 1354 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CCDC88AQ3V6T2 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 RPL10L-201ENST00000298283 812 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 ACTBP14-201ENST00000411655 1089 ntBASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 MED15P3-201ENST00000413613 326 ntBASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 Z82185.1-201ENST00000417792 549 ntTSL 4 BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 TRAPPC4-202ENST00000434101 794 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 AC004923.3-201ENST00000527532 355 ntBASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 AC113385.2-201ENST00000614465 762 ntBASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 HSPA8P5-201ENST00000456928 2069 ntBASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 AC012617.1-204ENST00000586340 2305 ntBASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 CD44-203ENST00000278386 484 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 SKA1-202ENST00000398452 979 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 RPSAP12-201ENST00000435879 888 ntBASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 MIR2278-201ENST00000516344 96 ntBASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 MBP-230ENST00000528160 584 ntTSL 5 BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 HNRNPA1P5-201ENST00000558213 966 ntBASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 FAM187B2P-201ENST00000577135 713 ntBASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 AC005777.1-201ENST00000588332 187 ntBASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 ANKRD26P3-201ENST00000454044 2748 ntBASIC17.1■□□□□ 0.33
CCDC88AQ3V6T2 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CCDC88AQ3V6T2 AC140479.7-201ENST00000636301 2332 ntBASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms